View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_367 (Length: 233)
Name: NF9985A_low_367
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_367 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 23 - 210
Target Start/End: Complemental strand, 623399 - 623212
Alignment:
| Q |
23 |
ctttgtggttcatattagatttttaccatgttgatctaccgatgtattctgaaaatattttatgaatcaaaacagttattcgaatgtacatatttgacaa |
122 |
Q |
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| T |
623399 |
ctttttggttcatattagattttttccatgttgatctaccgatgtattctgaaaatattttatgaatcaaaacagttattcgaatgtacatatttgacaa |
623300 |
T |
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| Q |
123 |
aaactgccaaggatttttagaaattaaagaatctatacaatttaagttgtcagaaatctgttcatattttagcatctgtgatgttcat |
210 |
Q |
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| T |
623299 |
aaactgccaaggatttttagaaattaaagaatctatacaatttaagttgtcagaaatctgttcgtattttagcatctgtgatgttcat |
623212 |
T |
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