View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_370 (Length: 231)
Name: NF9985A_low_370
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_370 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 21 - 213
Target Start/End: Original strand, 10707705 - 10707896
Alignment:
| Q |
21 |
ttgtaaacactaacaacacttacaacatttatggtcacttcatgactttgagtaatattgtaccttggtcttaccacacgatcagccatgaaattgaaat |
120 |
Q |
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| T |
10707705 |
ttgtaaacattaacaacacttacaacatttatggtcacttcatgactttgagtaatattgtaccttggtcttaccacacgatcagccatgaaattggaat |
10707804 |
T |
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| Q |
121 |
ttgaaactactggctagtagttctttttatttagtggaactctgaaattgaaactatataaaatacttaagagtatttttgtcttgtcatatt |
213 |
Q |
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| T |
10707805 |
ttgaaactactggctagtagttctttttatttagtggaactctgaaattgaaactatat-aaatacttaagagtatttttgtcttgtcatatt |
10707896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 108 - 204
Target Start/End: Original strand, 10694105 - 10694201
Alignment:
| Q |
108 |
atgaaattgaaatttgaaactactggctagtagttctttttatttagtggaactctgaaattgaaactatataaaatacttaagagtatttttgtct |
204 |
Q |
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| T |
10694105 |
atgaaattgaaatttgaaactactagctagtggttctttttatttagtggagctatgaaattgaaactatataaaatacttaagagtatttttgtct |
10694201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 10693950 - 10694037
Alignment:
| Q |
35 |
aacacttacaacatttatggtcacttcatgactttgagtaatattgtacc---ttggtcttaccacacgatcagccatgaaattgaaa |
119 |
Q |
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| T |
10693950 |
aacactcacaacatttatggtcacttcatgacttcgattaaaattggatcttgttggtcttacaacatgatcagccatgaaattgaaa |
10694037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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