View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_371 (Length: 231)
Name: NF9985A_low_371
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_371 |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 30287101 - 30286909
Alignment:
| Q |
19 |
cacaaaaaataaacatatcttaattagctttttcttattcaattaagtagaagcaaatcttttaattaatgttaacatgtcattnnnnnnnnnnnnttac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30287101 |
cacaaaaaataaacatatcttaattagctttttcttattcaattaagtagaagcaaatcttttaattaatgttaacatgtcattaaaaataaaaaattac |
30287002 |
T |
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| Q |
119 |
taacatatgctacattcaatttaatttaattttggtaggaaactattgtaattaggccatacagaaagagactgagtgagaatacagtatacc |
211 |
Q |
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| T |
30287001 |
taacatatgctacattcaatttaatttaattttggtaggaaactattgtaattaggccatacagaaagagactgagtgagaatacagtatacc |
30286909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 30292135 - 30291943
Alignment:
| Q |
19 |
cacaaaaaataaacatatcttaattagctttttcttattcaattaagtagaagcaaatcttttaattaatgttaacatgtcattnnnnnnnnnnnnttac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30292135 |
cacaaaaaataaacatatcttaattagctttttcttattcaattaagtagaagcaaatcttttaattaatgttaacatgtcattaaaaataaaaaattac |
30292036 |
T |
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| Q |
119 |
taacatatgctacattcaatttaatttaattttggtaggaaactattgtaattaggccatacagaaagagactgagtgagaatacagtatacc |
211 |
Q |
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| T |
30292035 |
taacatatgctacattcaatttaatttaattttggtaggaaactattgtaattaggccatacagaaagagactgagtgagaatacagtatacc |
30291943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 30304769 - 30304577
Alignment:
| Q |
19 |
cacaaaaaataaacatatcttaattagctttttcttattcaattaagtagaagcaaatcttttaattaatgttaacatgtcattnnnnnnnnnnnnttac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30304769 |
cacaaaaaataaacatatcttaattagctttttcttattcaattaagtagaagcaaatcttttaattaatgttaacatgtcattaaaaataaaaaattac |
30304670 |
T |
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| Q |
119 |
taacatatgctacattcaatttaatttaattttggtaggaaactattgtaattaggccatacagaaagagactgagtgagaatacagtatacc |
211 |
Q |
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| T |
30304669 |
taacatatgctacattcaatttaatttaattttggtaggaaactattgtaattaggccatacagaaagagactgagtgagaatacagtatacc |
30304577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 56 - 209
Target Start/End: Complemental strand, 30315651 - 30315494
Alignment:
| Q |
56 |
ttcaattaagtagaagcaaatcttttaattaatgttaacatgtcattnnnnnnnnnnnnttactaacatatgctacattcaatttaatttaattttggta |
155 |
Q |
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| T |
30315651 |
ttcaattaagtagaaccaaatattttaaataatgttaacatgtcattaaaaataaaaaataactaatataggctacattcaatttaatttaattttggta |
30315552 |
T |
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| Q |
156 |
ggaaactattgtaattaggccataca----gaaagagactgagtgagaatacagtata |
209 |
Q |
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| T |
30315551 |
gaaaactattgtaattaggccatacagaaggaaagagaccgagtgagaatatagtata |
30315494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 30299974 - 30299930
Alignment:
| Q |
23 |
aaaaataaacatatcttaattagctttttcttattcaattaagta |
67 |
Q |
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| T |
30299974 |
aaaaataaacatatcttaattagattttactcattcatttaagta |
30299930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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