View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9985A_low_372 (Length: 231)

Name: NF9985A_low_372
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9985A_low_372
NF9985A_low_372
[»] chr6 (1 HSPs)
chr6 (144-231)||(22082974-22083061)
[»] chr3 (4 HSPs)
chr3 (144-231)||(19768281-19768368)
chr3 (14-86)||(19768426-19768498)
chr3 (14-82)||(29199942-29200010)
chr3 (148-231)||(29199796-29199879)
[»] chr4 (2 HSPs)
chr4 (144-231)||(37616919-37617006)
chr4 (14-87)||(37616789-37616862)
[»] chr1 (2 HSPs)
chr1 (144-216)||(51389585-51389657)
chr1 (22-86)||(51389463-51389527)
[»] chr7 (1 HSPs)
chr7 (144-231)||(32663021-32663108)
[»] chr8 (2 HSPs)
chr8 (22-80)||(770534-770592)
chr8 (171-230)||(770404-770463)


Alignment Details
Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 144 - 231
Target Start/End: Complemental strand, 22083061 - 22082974
Alignment:
Q  144 ggtccctatttatacatgagaagtcccaaagaagagagacatggattcatgcatgcaacacagattaggcaaagagtaaaattgaatg 231  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22083061 ggtccctatttatacatgagaagtcctaaagaagagagacatggattcatgcatgcaacacagattaggcaaagagtaaaattgaatg 22082974  T

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Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 144 - 231
Target Start/End: Complemental strand, 19768368 - 19768281
Alignment:
Q  144 ggtccctatttatacatgagaagtcccaaagaagagagacatggattcatgcatgcaacacagattaggcaaagagtaaaattgaatg 231  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19768368 ggtccctatttatacatgagaagtcctaaagaagagagacatggattcatgcatgcaacacagattaggcaaagagtaaaattgaatg 19768281  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 19768498 - 19768426
Alignment:
Q  14 cccaaatgaggggtttaaattcttgcaaatgcaaatccataaaaatgtcaaacaaagaagtgttagagagagt 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19768498 cccaaatgaggggtttaaattcttgcaaatgcaaatccataaaaatgtcaaacaaagaagtgttagagagagt 19768426  T

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Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 29200010 - 29199942
Alignment:
Q  14 cccaaatgaggggtttaaattcttgcaaatgcaaatccataaaaatgtcaaacaaagaagtgttagaga 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29200010 cccaaatgaggggtttaaattcttgcaaatgcaaatccataaaaatgtcaaacaaagaagtgttagaga 29199942  T

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Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 148 - 231
Target Start/End: Complemental strand, 29199879 - 29199796
Alignment:
Q  148 cctatttatacatgagaagtcccaaagaagagagacatggattcatgcatgcaacacagattaggcaaagagtaaaattgaatg 231  Q
    |||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||  ||||| ||||||||||||||| ||||    
T  29199879 cctatttatacatgagaagtcctaaagaagagagtcatggattcaagcatgcaacaacgattacgcaaagagtaaaattaaatg 29199796  T

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Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 144 - 231
Target Start/End: Original strand, 37616919 - 37617006
Alignment:
Q  144 ggtccctatttatacatgagaagtcccaaagaagagagacatggattcatgcatgcaacacagattaggcaaagagtaaaattgaatg 231  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37616919 ggtccctatttatacatgagaagtcctaaagaagagagacatggattcatgcatgcaacacaaattaggcaaagagtaaaattgaatg 37617006  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 37616789 - 37616862
Alignment:
Q  14 cccaaatgaggggtttaaattcttgcaaatgcaaatccataaaaatgtcaaacaaagaagtgttagagagagta 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37616789 cccaaatgaggggtttaaattcttgcaaatgcaaatccataaaaatgtcaaacaaagaagtgttagagagagta 37616862  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 51389585 - 51389657
Alignment:
Q  144 ggtccctatttatacatgagaagtcccaaagaagagagacatggattcatgcatgcaacacagattaggcaaa 216  Q
    |||||||||||||||||||||||||| ||||||||| | |||||||||| ||||||||||  || ||||||||    
T  51389585 ggtccctatttatacatgagaagtcctaaagaagagggtcatggattcaagcatgcaacaatgaataggcaaa 51389657  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 51389463 - 51389527
Alignment:
Q  22 aggggtttaaattcttgcaaatgcaaatccataaaaatgtcaaacaaagaagtgttagagagagt 86  Q
    ||||| ||||||||| |||||||||||||||||||||  |||||||||||||| ||||| |||||    
T  51389463 aggggcttaaattctcgcaaatgcaaatccataaaaagatcaaacaaagaagttttagaaagagt 51389527  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 144 - 231
Target Start/End: Complemental strand, 32663108 - 32663021
Alignment:
Q  144 ggtccctatttatacatgagaagtcccaaagaagagagacatggattcatgcatgcaacacagattaggcaaagagtaaaattgaatg 231  Q
    |||||||||||||||||||||||||| ||| ||||| |  ||| ||||| ||||||||||  |||| || ||||||||||| ||||||    
T  32663108 ggtccctatttatacatgagaagtcctaaacaagagggtaatgaattcacgcatgcaacaatgattgggaaaagagtaaaactgaatg 32663021  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 770592 - 770534
Alignment:
Q  22 aggggtttaaattcttgcaaatgcaaatccataaaaatgtcaaacaaagaagtgttaga 80  Q
    ||||| ||||||||| ||||||||||||||||||||| | ||||||||||||| |||||    
T  770592 aggggcttaaattctcgcaaatgcaaatccataaaaaggccaaacaaagaagttttaga 770534  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 770463 - 770404
Alignment:
Q  171 aaagaagagagacatggattcatgcatgcaacacagattaggcaaagagtaaaattgaat 230  Q
    ||||||||| | ||||||||||  |||||||||  ||||||||||| |||||||||||||    
T  770463 aaagaagagggtcatggattcaaacatgcaacaacgattaggcaaatagtaaaattgaat 770404  T

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