View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_390 (Length: 230)
Name: NF9985A_low_390
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_390 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 45481526 - 45481657
Alignment:
| Q |
1 |
tttcaccacatttgtacttgtaatcatcatcttttcgagtttggcttaatgccccttgtcttcatccaatcatcattctattattaaaattgtggatact |
100 |
Q |
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| T |
45481526 |
tttcacctcatttgtacttgtaatcatcatcttttcgagtttggcttaatgccccttgccttcatccaatcatcgttctattattaaaattgtggatact |
45481625 |
T |
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| Q |
101 |
ctcaactttttaataaagcaagaaaagtttac |
132 |
Q |
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| T |
45481626 |
ctcaactttttaataaagcaagaaaagtttac |
45481657 |
T |
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Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 45481653 - 45481709
Alignment:
| Q |
170 |
tttacattacattcaagtttgcttgtaaactatgaatgggccatagaggacattttg |
226 |
Q |
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| T |
45481653 |
tttacattacattcaagtttgcttgtaaactattaatgggccatagaggacattttg |
45481709 |
T |
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