View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_398 (Length: 230)
Name: NF9985A_low_398
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_398 |
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Alignment Details
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 42747270 - 42747165
Alignment:
| Q |
1 |
aagtgattaaagggtcttggaaagaaatagatgacacagccaatacaccaggaggaatggaacggctacagaaatcgttcagattgtgcaagtgagccat |
100 |
Q |
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| T |
42747270 |
aagtgattaaagggtcttggaaagaaatagatgacacagccaatacaccaggaggaatagaacagctacagaaatcgttcagattgtgcaagtgagccat |
42747171 |
T |
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| Q |
101 |
gtcaaa |
106 |
Q |
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|||||| |
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| T |
42747170 |
gtcaaa |
42747165 |
T |
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Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 42747100 - 42747047
Alignment:
| Q |
171 |
ctgttgaaacagcaataatataagtgcaggtgatctgaaaaattggcttcaaac |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42747100 |
ctgttgaaacagcaataatataagtgcaggtgatctgaaaaattggcttcaaac |
42747047 |
T |
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