View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_400 (Length: 229)
Name: NF9985A_low_400
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_400 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 7 - 175
Target Start/End: Complemental strand, 53870021 - 53869853
Alignment:
| Q |
7 |
taaaaaacacttgcagaggagttgggatgtaggagaaacaatgagtggttgtctaaaagatgatgggtatgcaactgaaattagaaatgctacaaagaat |
106 |
Q |
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|||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53870021 |
taaaaaacacttgctgaggagttgggatgtaagagaaacaatgagtggttgtctagaagatgatgggtatgcaactgaaattagaaatgctacaaagaat |
53869922 |
T |
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| Q |
107 |
ttcaaaatgaatattgacatcttcaagagatacttgagtaagagcaagtgaagaaaagacccaccatta |
175 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53869921 |
ttcaaaatgaatattgacatcttcaagagatacttgagtaagagcaagtgaagaaaagacccaccatta |
53869853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 149; Significance: 7e-79; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 7 - 175
Target Start/End: Complemental strand, 5277796 - 5277628
Alignment:
| Q |
7 |
taaaaaacacttgcagaggagttgggatgtaggagaaacaatgagtggttgtctaaaagatgatgggtatgcaactgaaattagaaatgctacaaagaat |
106 |
Q |
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|||||||||||||| ||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5277796 |
taaaaaacacttgctgaggaattgggatgtaagagaaacaatgagtggttgtctagaagatgatgggtatgcaactgaaattagaaatgctacaaagaat |
5277697 |
T |
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| Q |
107 |
ttcaaaatgaatattgacatcttcaagagatacttgagtaagagcaagtgaagaaaagacccaccatta |
175 |
Q |
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| T |
5277696 |
ttcaaaataaatattgacatcttcaagagatacttgagtaagagcaagtgaagaaaagacccaccatta |
5277628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 7 - 175
Target Start/End: Complemental strand, 40727339 - 40727171
Alignment:
| Q |
7 |
taaaaaacacttgcagaggagttgggatgtaggagaaacaatgagtggttgtctaaaagatgatgggtatgcaactgaaattagaaatgctacaaagaat |
106 |
Q |
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|||||||||||||| |||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40727339 |
taaaaaacacttgctgaggagttgggatgtaagagaaacaatgaggggttgtctagaagatgatgggtatgcaactgaaattagaaatgctacaaagaat |
40727240 |
T |
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| Q |
107 |
ttcaaaatgaatattgacatcttcaagagatacttgagtaagagcaagtgaagaaaagacccaccatta |
175 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40727239 |
ttcaaaataaatattgacatcttcaagagatacttgagtaagagcaagtgaagaaaagacccaccatta |
40727171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 229
Target Start/End: Complemental strand, 5277609 - 5277574
Alignment:
| Q |
194 |
ttgaacattgactaaaatttatgggtgagagagaag |
229 |
Q |
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||||||||||||||||| |||||||||||||||||| |
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| T |
5277609 |
ttgaacattgactaaaaattatgggtgagagagaag |
5277574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 7 - 175
Target Start/End: Original strand, 625118 - 625285
Alignment:
| Q |
7 |
taaaaaacacttgcagaggagttgggatgtaggagaaacaatgagtggttgtctaaaagatgatgggtatgcaactgaaattagaaatgctacaaagaat |
106 |
Q |
| |
|
||||| |||||||| |||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
625118 |
taaaatacacttgctgaggagttgggatgtaagagaaacaatgagtggttgt-tagaagatgatgggtatgcaactgaaattagaaatactacaaagaat |
625216 |
T |
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| Q |
107 |
ttcaaaatgaatattgacatcttcaagagatacttgagtaagagcaagtgaagaaaagacccaccatta |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
625217 |
ttcaaaatgaatattgacatcttcaagagatacttgagtaagagcaagtgaagaaaagagccaccatta |
625285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 229
Target Start/End: Original strand, 625304 - 625339
Alignment:
| Q |
194 |
ttgaacattgactaaaatttatgggtgagagagaag |
229 |
Q |
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||||||||||||||||| |||||||||||||||||| |
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| T |
625304 |
ttgaacattgactaaaaattatgggtgagagagaag |
625339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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