View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_404 (Length: 229)
Name: NF9985A_low_404
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_404 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 17701143 - 17700923
Alignment:
| Q |
1 |
tgaataatggcggcaccttgaagaagactacaaaaattagttgtgttttttcttcttctcttcacaaccatgatcatgatgatgatgggaaaccgaagaa |
100 |
Q |
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| T |
17701143 |
tgaataacggcggcaccttgaagaagactataaaaattacttgtgttttttcttcttctcttcacaaccatgatcatgatgatg---ggaaaccgaagaa |
17701047 |
T |
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| Q |
101 |
ccatacatgtgatgtttgtaacaaggtattttcatccaacaatgctttgaagggacatatgagatggcatactccaaagggtttgaagaagggtactatt |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17701046 |
ccatacatgtgatgtttgtaacaaggtatttttatccaacaatgctttgaagggacatatgagatggcatactccaaagggtttgaagaagggtactatt |
17700947 |
T |
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| Q |
201 |
attcactcaccgactgcccaatct |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
17700946 |
attcactcaccgactgcccaatct |
17700923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 17662936 - 17663156
Alignment:
| Q |
1 |
tgaataatggcggcaccttgaagaagactacaaaaattagttgtgttttttcttcttctcttcacaaccatgatcatgatgatgatgggaaaccgaagaa |
100 |
Q |
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| T |
17662936 |
tgaataacggcggcaccttgaagaagactacaaaaattacttgtgttttttcttcttctcttcacaaccatgatcatgatgatt---ggaaaccgaagaa |
17663032 |
T |
|
| Q |
101 |
ccatacatgtgatgtttgtaacaaggtattttcatccaacaatgctttgaagggacatatgagatggcatactccaaagggtttgaagaagggtactatt |
200 |
Q |
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| T |
17663033 |
ccatacaagtgatgtttgtcacaaggtattttcatccaacactgctttgaagggacatatgagatggcatactccaaagggtttgaagaaggatactatt |
17663132 |
T |
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| Q |
201 |
attcactcaccgactgcccaatct |
224 |
Q |
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|||| ||||| |||||||| |||| |
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| T |
17663133 |
attccctcactgactgccccatct |
17663156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 45 - 224
Target Start/End: Complemental strand, 21900125 - 21899949
Alignment:
| Q |
45 |
gttttttcttcttctcttcacaaccatgatcatgatgatgatgggaaaccgaagaaccatacatgtgatgtttgtaacaaggtattttcatccaacaatg |
144 |
Q |
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| T |
21900125 |
gttttttcttcttctcttcacaatcataatcatgatgatt---ggaaactgaagaaccatacatgtgatgtttgtaacaaggttttttcgtccaacaatg |
21900029 |
T |
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| Q |
145 |
ctttgaagggacatatgagatggcatactccaaagggtttgaagaagggtactattattcactcaccgactgcccaatct |
224 |
Q |
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| T |
21900028 |
ctttgaacgggcatatgagatggcatactcaaaagggttcgaagaatggtgttattaaccacccaccgactgccccatct |
21899949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 166
Target Start/End: Complemental strand, 38227637 - 38227577
Alignment:
| Q |
106 |
catgtgatgtttgtaacaaggtattttcatccaacaatgctttgaagggacatatgagatg |
166 |
Q |
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| T |
38227637 |
catgtgatgtttgcaacaaggtttttacttctaacaaagcattgaatggacatatgagatg |
38227577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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