View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_409 (Length: 228)
Name: NF9985A_low_409
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_409 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 20816515 - 20816289
Alignment:
| Q |
1 |
gggtcaacaacatagactataccatcgatggtcaatgaagtttctgctatgtttgttgataccaaaatcttccttccaggaaggcctccctctctaactg |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20816515 |
gggtcaacaacatagactataccattgatggtcaatgaagtttctgctatgtttgttgataccaaaatcttccttccaggaaggcctccctctctaactg |
20816416 |
T |
|
| Q |
101 |
gaggtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtacaactttcacagggcccaccgtgtccccccgaattga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20816415 |
gaggtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtacaactttcacagggcccaccgtgtccccccgaattgc |
20816316 |
T |
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| Q |
201 |
aacttcattggatattcttcgacatgc |
227 |
Q |
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|||||||||||||||| | |||||||| |
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| T |
20816315 |
aacttcattggatattttgcgacatgc |
20816289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 4 - 192
Target Start/End: Original strand, 38779633 - 38779821
Alignment:
| Q |
4 |
tcaacaacatagactataccatcgatggtcaatgaagtttctgctatgtttgttgataccaaaatcttccttccaggaaggcctccctctctaactggag |
103 |
Q |
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|||| |||||||||||||||||| || ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||| |
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| T |
38779633 |
tcaataacatagactataccatcaattgtcaaggaagtttctgctatgtttgttgataccacaatcttccttccaggggggcctccctccttaactggag |
38779732 |
T |
|
| Q |
104 |
gtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtacaactttcacagggcccaccgtgtccccc |
192 |
Q |
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| T |
38779733 |
gtggagctggctcaaaaatcttctgttgcatagctgggggaagagtagaatataatggcacggctttcacagggcccacctggtccccc |
38779821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 33388589 - 33388771
Alignment:
| Q |
1 |
gggtcaacaacatagactataccatcgatggtcaatgaagtttctgctatgtttgttgataccaaaatcttccttccaggaaggcctccctctctaactg |
100 |
Q |
| |
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||||||| |||||| ||||||||||| || ||||| |||||||||||||||||||||||||||| |||||| |||||||| ||||||||||| |||||| |
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| T |
33388589 |
gggtcaataacatatactataccatcaatagtcaaagaagtttctgctatgtttgttgataccacaatctttcttccagggaggcctccctccttaactg |
33388688 |
T |
|
| Q |
101 |
gaggtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtacaactttcacagggcccacc |
183 |
Q |
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|||| |||||||||||||||||| | || |||||||| |||||||| |||||||||| | || |||||||||||||||||| |
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| T |
33388689 |
gaggcggagctggctcaaaaatcttctgctgcatagctgggggaagggtagaatacagtgataacactttcacagggcccacc |
33388771 |
T |
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