View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_410 (Length: 228)
Name: NF9985A_low_410
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_410 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 3533267 - 3533487
Alignment:
| Q |
2 |
atctaataaaatatttaaaaatatatatata--agctatttcattcggtttttcttataacaacaaatgtgtcaacataagttgatgtatctagtctata |
99 |
Q |
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| T |
3533267 |
atctaataaaatatttaaaaatatatatatataagctatttcattcggtctttcttataataacaaatgtgtcaacataaattgatgtatttggtctata |
3533366 |
T |
|
| Q |
100 |
ttttaaacaaaatatgtccnnnnnnnnnnacctatttgtcttttatataagtgactagagagagtaattttaatatttcatggatacaaattcatgagta |
199 |
Q |
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|||| |||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3533367 |
ttttgaacaaaatatatcctttttttt--acctatttgtcttttatataagtgactagaaagagtaattttaatatttcatggatacaaattcatgagta |
3533464 |
T |
|
| Q |
200 |
atcgcaaatattgaaagaatatt |
222 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
3533465 |
atcgcaaatattgaaagaatatt |
3533487 |
T |
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