View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_425 (Length: 226)
Name: NF9985A_low_425
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_425 |
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| [»] scaffold0092 (1 HSPs) |
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| [»] scaffold0053 (1 HSPs) |
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Alignment Details
Target: scaffold0092 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: scaffold0092
Description:
Target: scaffold0092; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 8 - 218
Target Start/End: Original strand, 42433 - 42646
Alignment:
| Q |
8 |
acatcagattgactcagtggtcacaatgctaaagcagaagcttcagacgcaacccctgttagtttttattcttgttttgttcagttttgaaaaattaaac |
107 |
Q |
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| T |
42433 |
acatcagattgactcagtggtctcaatgctaaagcagaagcttcagacgcaaccc----------------ttgttttgttcagttttgaaaaattgaac |
42516 |
T |
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| Q |
108 |
ggcatattttttgtcaacccatttacctgattgttgtctttaacttg-------------------tcaactttgacaaatgggaggtttttgttaatga |
188 |
Q |
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| T |
42517 |
ggcatatttattgtcaacccgtttacctgattgttgcctttaacttgtcattgagtagctactggatcaactttgacaaatgggaggtttttgttaatga |
42616 |
T |
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| Q |
189 |
tgatcgcacacacaccttcttctcagtcga |
218 |
Q |
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| T |
42617 |
tgatcgcacacgcaccttcctctcagtcga |
42646 |
T |
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Target: scaffold0053 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0053
Description:
Target: scaffold0053; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 8242 - 8459
Alignment:
| Q |
8 |
acatcagattgactcagtggtcacaatgctaaagcagaagcttcagacgcaacccctgttagtttttattcttgttttgttcagttttgaaaaattaaac |
107 |
Q |
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| T |
8242 |
acatcagattgactcagtggtcacaatgctaaaacagaagcttcagacacaatccctgtaagtttttattctt----------gttttgaaaaattgaac |
8331 |
T |
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| Q |
108 |
ggcatattttttgtcaacccatttacctgattgttgtctttaacttgtca---------------------actttgacaaatgggaggtttttgttaat |
186 |
Q |
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| T |
8332 |
agaatattttttgtcaa-ccgtttacctgattgttgcctttaacttgtcatcttgagcagctactggatcgactttgacaaatgggaggtttttgttaat |
8430 |
T |
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| Q |
187 |
gatgatcgcacacacaccttcttctcagt |
215 |
Q |
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| T |
8431 |
gatgatcgcacacgcaccttcctctcagt |
8459 |
T |
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