View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_43 (Length: 410)
Name: NF9985A_low_43
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 11 - 405
Target Start/End: Original strand, 40542702 - 40543095
Alignment:
| Q |
11 |
gaagaagtgttaaaaagagaagccccannnnnnnncaaaaaattgttttggtctagtaactagtttgctcgtgaaagttttaaactccagaatatttatc |
110 |
Q |
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| T |
40542702 |
gaagaagtgttaaaaagagaagcccaattttttctcaaaatattgttttggtctagtaactagtttgctcgtgaaagttttaaactccaaaatatttatc |
40542801 |
T |
|
| Q |
111 |
aaattattcatgttcttttttattctcttttatttcatgtgtcaatgaacgaggcgaatgatgcaatttattccatgccttcctataaagctctagatct |
210 |
Q |
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| T |
40542802 |
aaattattcatgttcttttttattctcttttatttcatgtgtcaatgagagaggtgaatgatgcaatttattccatgccttcctataaagctctagatct |
40542901 |
T |
|
| Q |
211 |
tgatggatttcaacccattttacttcttatatatatgtagatcgtagggagttatattgtttgaaagcttgttttggagtgttttaatattggtattatc |
310 |
Q |
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| T |
40542902 |
tgatg-atttcaacccattttacttcttatatatatgtagatcgtagggagttatattgtttgaaagcttgttttggagtgttttaatattggtattatc |
40543000 |
T |
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| Q |
311 |
cctcctaagttgacatagactcttattgttccaattcctaagagtaataaacctcaaagtttgatggcctttaggacgattatcctttataacat |
405 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40543001 |
cctcctaagttgacatagactcttattgttccaattcctaagagtaataaacctcaaagtttgatggcctttaggacgactatcctttataacat |
40543095 |
T |
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