View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_431 (Length: 225)
Name: NF9985A_low_431
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_431 |
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| [»] chr1 (4 HSPs) |
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| [»] scaffold0432 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 9805341 - 9805132
Alignment:
| Q |
16 |
gacatcattgaacaggataagatggaaggaatttcatgtactcgcgaaaagggagaatcaaggtatattgtgatttttgttttattcggttattaaaata |
115 |
Q |
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| T |
9805341 |
gacatcattgaacaggacaagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgattttttttttattcggttattaaaata |
9805242 |
T |
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| Q |
116 |
tgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttttgtacacataaatgcatcaaagggaaaaggaattcttgttgaa |
215 |
Q |
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| T |
9805241 |
tgtacttgtatttgttattttctatttacttctagtacacattttatattaaatttttgtacataggaatgcatcaaagggaaaaggaattcttgttgaa |
9805142 |
T |
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| Q |
216 |
caaaatgaaa |
225 |
Q |
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|||||||||| |
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| T |
9805141 |
caaaatgaaa |
9805132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 75 - 225
Target Start/End: Complemental strand, 9818211 - 9818059
Alignment:
| Q |
75 |
aaggtatattgtgattt--ttgttttattcggttattaaaatatgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttt |
172 |
Q |
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| T |
9818211 |
aaggtatattgtgatttattttttttatacggttattaaattatgtacttgtatttgttattttctatttacttctagtacacaatttatattaaatttt |
9818112 |
T |
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| Q |
173 |
tgtacacataaatgcatcaaagggaaaaggaattcttgttgaacaaaatgaaa |
225 |
Q |
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| T |
9818111 |
tgtacacaagaatgcatcaaagggaaaaggaattcttgttgaacaaaatgaaa |
9818059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 180
Target Start/End: Original strand, 9806455 - 9806621
Alignment:
| Q |
16 |
gacatcattgaacaggataagatggaaggaatttcatgtactcgcgaaaagggagaatcaaggtatattgtgatt--tttgttttattcggttattaaaa |
113 |
Q |
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| T |
9806455 |
gacatcattgaacaagacaagatggaaggtatttcacgtgctcacgaaaagggagaatcaaggtatattgtgatttatttattttagttggttattcaaa |
9806554 |
T |
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| Q |
114 |
tatgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttttgtacaca |
180 |
Q |
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| T |
9806555 |
tatgtacttgtgtttgttattttctatttgtttctaatacacattttatatttaatttttgtacaca |
9806621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 9806621 - 9806653
Alignment:
| Q |
192 |
aagggaaaaggaattcttgttgaacaaaatgaa |
224 |
Q |
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| T |
9806621 |
aagggaaaaggaattattgttgaacaaaatgaa |
9806653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 12285 - 12073
Alignment:
| Q |
13 |
atggacatcattgaacaggataagatggaaggaatttcatgtactcgcgaaaagggagaatcaaggtatattgtgattt-ttgttttattcggttattaa |
111 |
Q |
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| T |
12285 |
atggacatcattgatcatgacaagatggaaggtattccatgtactcatgaaaagggggaatcaacgtattttgtgatttatttttttagttggttattca |
12186 |
T |
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| Q |
112 |
aatatgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttttgtacacataaatgcatcaaagggaaaaggaattcttgt |
211 |
Q |
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| T |
12185 |
attatgtacttatgtttgttattttatatttacttctagtac-cattttatattaaattttggtacacgataatgcagcgaagggagaaggaattcttgt |
12087 |
T |
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| Q |
212 |
tgaacaaaatgaaa |
225 |
Q |
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| T |
12086 |
tgaacaaaatgaaa |
12073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 132
Target Start/End: Complemental strand, 2371144 - 2371052
Alignment:
| Q |
41 |
aaggaatttcatgtactcgcgaaaagggagaatcaaggtatattgtgattt-ttgttttattcggttattaaaatatgtacttgtatttgtta |
132 |
Q |
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| T |
2371144 |
aaggtattccatgtactcgtgaaaaaggagaatcaaggtatattgtgatttatttttttagtcgattattcaaatatatacttatgtttgtta |
2371052 |
T |
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