View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_434 (Length: 223)
Name: NF9985A_low_434
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_434 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 38 - 204
Target Start/End: Complemental strand, 13945313 - 13945147
Alignment:
| Q |
38 |
gacatcagttgttggatattagttcgccttatatacttgactaataagagattatgtattaacatggagtctccaaacttattttgctagcattgcttcg |
137 |
Q |
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| T |
13945313 |
gacatcagttgttggatattagttcgccttatatacttgactaataagagattatgtattaacatggagtctccaaacttattttgctagcattgcttcg |
13945214 |
T |
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| Q |
138 |
ttgaacatccttaagtttttgaaacttaaacctccctcaaatttaggtttaaagagagtttccttct |
204 |
Q |
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| T |
13945213 |
ttgaacatccttaagtttttgaaacctaaacctccctcaaatttaggtttaaagagagtttccttct |
13945147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 38 - 204
Target Start/End: Complemental strand, 14086502 - 14086336
Alignment:
| Q |
38 |
gacatcagttgttggatattagttcgccttatatacttgactaataagagattatgtattaacatggagtctccaaacttattttgctagcattgcttcg |
137 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14086502 |
gacatcagttgttggatattagttcgccttatatacttgactaataagagattatgtattaacatggagtctccaaacttattttgctagcattgcttcg |
14086403 |
T |
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| Q |
138 |
ttgaacatccttaagtttttgaaacttaaacctccctcaaatttaggtttaaagagagtttccttct |
204 |
Q |
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| T |
14086402 |
ttgaacatccttaagtttttgaaacctaaacctccctcaaatttaggtttaaagagagtttccttct |
14086336 |
T |
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