View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_436 (Length: 223)
Name: NF9985A_low_436
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_436 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 8398416 - 8398634
Alignment:
| Q |
5 |
ttgactaccatgcagactaataaataatccaaccataaacttaaatcagtcaatattgatagatgacagattataagtgaaactcattcagtaaattata |
104 |
Q |
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| T |
8398416 |
ttgactatcatgcagactaataaacaatccaaccataaacttaaatcagtcaatattgatagatgacagattataagtgaaactcattcagtaaattata |
8398515 |
T |
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| Q |
105 |
agtgaatcttctatccctaccttaaatgacttatgatacaaacctattttgcagcttaaatacaagaatagagttttaaattgatttactgataaaacaa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8398516 |
agtgaatcttctatccctaccttaaatgacttatgatacaaacctattttgcagcttaaatacaagaatagagttttaaattgatttactgataaaacaa |
8398615 |
T |
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| Q |
205 |
ccaattgatccatacaaaa |
223 |
Q |
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||||||||||||||||||| |
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| T |
8398616 |
ccaattgatccatacaaaa |
8398634 |
T |
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