View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_444 (Length: 220)
Name: NF9985A_low_444
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_444 |
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| [»] scaffold0009 (3 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 173; Significance: 3e-93; HSPs: 3)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 25 - 201
Target Start/End: Complemental strand, 40186 - 40010
Alignment:
| Q |
25 |
cacagatcaagggttttaagcgaaggaagatcaaccgaaaagcgagacatagagggtacatttaatctatccaatttgaggaccacaagtgtttcacaca |
124 |
Q |
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| T |
40186 |
cacagatcaagggttttaagcgaaggaagatcaaccgaaaagcgagacatagagggtacatttaatctatccaatttgaggaccacaagtgtttcacaca |
40087 |
T |
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| Q |
125 |
cgaaaatggtaggtgacaacatcacttgtaacatgcatagatagagatcctcaacaccgcgttgttttgctgcttca |
201 |
Q |
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| T |
40086 |
cgaaaatggtaggtgacaacatcacttgtaacatgcatagatagagatcctcaacaccgcgtcgttttgctgcttca |
40010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 25 - 199
Target Start/End: Complemental strand, 33559 - 33391
Alignment:
| Q |
25 |
cacagatcaagggttttaagcgaaggaagatcaaccgaaaagcgagacatagagggtacatttaatctatccaatttgaggaccacaagtgtttcacaca |
124 |
Q |
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| T |
33559 |
cacagatcgagcgttttaagcaaaggaagatcaactgaacaacgagat------ggtacaattattctatccaatttgagaaccacaagtgtttcacaca |
33466 |
T |
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| Q |
125 |
cgaaaatggtaggtgacaacatcacttgtaacatgcatagatagagatcctcaacaccgcgttgttttgctgctt |
199 |
Q |
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| T |
33465 |
cgaaaatggtaggcgacaaggtcacttctaccatgcatagatagagatcctcgaccccacgtcgttttgctgctt |
33391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 200
Target Start/End: Complemental strand, 21826 - 21734
Alignment:
| Q |
108 |
cacaagtgtttcacacacgaaaatggtaggtgacaacatcacttgtaacatgcatagatagagatcctcaacaccgcgttgttttgctgcttc |
200 |
Q |
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| T |
21826 |
cacaagtgttctacaaacgaaaatggtaggcgacaaggtcacttctaacaagtttagatagagatcctcgaccccacgtcgttttgcttcttc |
21734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 137
Target Start/End: Original strand, 19970209 - 19970313
Alignment:
| Q |
33 |
aagggttttaagcgaaggaagatcaaccgaaaagcgagacatagagggtacatttaatctatccaatttgaggaccacaagtgtttcacacacgaaaatg |
132 |
Q |
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| T |
19970209 |
aagggttttgagcgaaggaagatcaacagaagaacgaaacatagttgttacatgtatgctaaacaatttcagaaccacaagtgtttcacagcagaaaatg |
19970308 |
T |
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| Q |
133 |
gtagg |
137 |
Q |
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||||| |
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| T |
19970309 |
gtagg |
19970313 |
T |
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