View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9985A_low_445 (Length: 220)

Name: NF9985A_low_445
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9985A_low_445
NF9985A_low_445
[»] chr1 (8 HSPs)
chr1 (11-182)||(17560737-17560908)
chr1 (15-130)||(4366511-4366626)
chr1 (18-126)||(21855403-21855511)
chr1 (25-158)||(39379049-39379182)
chr1 (28-156)||(4570879-4571007)
chr1 (17-145)||(10218926-10219054)
chr1 (81-167)||(4014944-4015030)
chr1 (18-126)||(4016792-4016900)
[»] chr7 (16 HSPs)
chr7 (16-167)||(29874450-29874602)
chr7 (17-158)||(29859395-29859536)
chr7 (14-167)||(29921972-29922125)
chr7 (25-167)||(29867188-29867327)
chr7 (25-167)||(29881205-29881347)
chr7 (45-160)||(29454089-29454204)
chr7 (28-126)||(29445676-29445774)
chr7 (76-167)||(29430980-29431071)
chr7 (76-160)||(14076678-14076762)
chr7 (76-160)||(14386706-14386790)
chr7 (81-160)||(660833-660912)
chr7 (75-126)||(29106813-29106864)
chr7 (75-126)||(29899373-29899424)
chr7 (13-122)||(29920067-29920176)
chr7 (100-168)||(19351047-19351115)
chr7 (28-123)||(29895418-29895516)
[»] chr4 (7 HSPs)
chr4 (25-157)||(3557675-3557807)
chr4 (18-157)||(3565686-3565825)
chr4 (25-167)||(3560937-3561079)
chr4 (12-59)||(1686372-1686419)
chr4 (76-146)||(53774840-53774910)
chr4 (76-160)||(11970968-11971052)
chr4 (84-145)||(53430100-53430161)
[»] chr3 (1 HSPs)
chr3 (12-167)||(3625670-3625825)
[»] chr5 (2 HSPs)
chr5 (18-126)||(24330919-24331027)
chr5 (15-144)||(29597554-29597683)
[»] chr2 (1 HSPs)
chr2 (100-167)||(14514924-14514991)
[»] chr6 (1 HSPs)
chr6 (76-147)||(6921349-6921420)


Alignment Details
Target: chr1 (Bit Score: 144; Significance: 7e-76; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 11 - 182
Target Start/End: Complemental strand, 17560908 - 17560737
Alignment:
Q  11 catagaaccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggtt 110  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  17560908 catagaaccaacttttggtgtgttgggggactgtctttgtttttcttattgttacaaggaaatcgatttggttatatggcacatgaagaaatttggggtt 17560809  T
Q  111 gaagattcttggactccattccctagaattagttataacgatcttcaaattgattatagctatgatggttat 182  Q
    |||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  17560808 gaagattcttggacaccattccttataattagttataacgatcttcaaattgattatagctatgatggttat 17560737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 4366626 - 4366511
Alignment:
Q  15 gaaccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaag 114  Q
    ||||||||  ||||||||||||||||||| |||||||||||||||  ||||||| |||  ||||| ||| |||||||  |||||||||| ||||||||||    
T  4366626 gaaccaacagttggtgtgttgggggactgcctttgtttttcttattcttacaagaaaactgattttgttttatggcagatgaagaaattcggggttgaag 4366527  T
Q  115 attcttggactccatt 130  Q
    | ||||||||||||||    
T  4366526 agtcttggactccatt 4366511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 21855511 - 21855403
Alignment:
Q  18 ccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagatt 117  Q
    |||||||||||||| ||| ||| ||||||||||||||| |||   |||||||||| |||||| ||||||||| |  ||||| ||||||||||||||||||    
T  21855511 ccaactattggtgtattgaggggctgtctttgtttttcatattcgtacaaggaaaccgattttgttatatgggagatgaaggaatttggggttgaagatt 21855412  T
Q  118 cttggactc 126  Q
    |||||||||    
T  21855411 cttggactc 21855403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 158
Target Start/End: Complemental strand, 39379182 - 39379049
Alignment:
Q  25 ttggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagattcttggac 124  Q
    ||||||||||||| ||||||||||||||||||||| ||||||   |||  |||||  ||||||||||  ||||| |||||||||||||||| ||||||||    
T  39379182 ttggtgtgttgggtgactgtctttgtttttcttattgttacagaaaaactgattttattatatggcagatgaaggaatttggggttgaagagtcttggac 39379083  T
Q  125 tccattccctagaattagttataacgatcttcaa 158  Q
    || ||| | || ||| |||||| | |||||||||    
T  39379082 tcaatttcttaaaatcagttatcatgatcttcaa 39379049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 28 - 156
Target Start/End: Original strand, 4570879 - 4571007
Alignment:
Q  28 gtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagattcttggactcc 127  Q
    |||||||||| | ||| |||||||||||||||    ||| |||||  ||||| |||||||||||  |||||||||||||||||||||||||||||||||     
T  4570879 gtgtgttgggaggctgcctttgtttttcttattcacacagggaaactgattttgttatatggcaaatgaagaaatttggggttgaagattcttggactca 4570978  T
Q  128 attccctagaattagttataacgatcttc 156  Q
    ||| | || |||||||||||  |||||||    
T  4570979 attgcttaaaattagttatagtgatcttc 4571007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 10218926 - 10219054
Alignment:
Q  17 accaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagat 116  Q
    |||||||||||||||||||||||  || ||||||||||||| |    |||||||||  ||||| ||| |||||||  |||||||||||||| ||||||||    
T  10218926 accaactattggtgtgttggggggttgcctttgtttttcttttttgcacaaggaaactgattttgttgtatggcaaatgaagaaatttgggattgaagat 10219025  T
Q  117 tcttggactccattccctagaattagtta 145  Q
    |||||||||| ||| | || |||||||||    
T  10219026 tcttggactcaattacttaaaattagtta 10219054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 167
Target Start/End: Complemental strand, 4015030 - 4014944
Alignment:
Q  81 gttatatggcacgtgaagaaatttggggttgaagattcttggactccattccctagaattagttataacgatcttcaaattgattat 167  Q
    |||||||||||  ||||||||||||||||||||||||||||||||| ||||| || | |||||||  | ||||||| ||| ||||||    
T  4015030 gttatatggcagatgaagaaatttggggttgaagattcttggactcaattccttaaagttagttaccatgatcttctaatagattat 4014944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 4016900 - 4016792
Alignment:
Q  18 ccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagatt 117  Q
    ||||||||| |||||||||||| ||| |||||||||||||||   || | | ||| | ||||   ||| |||||  ||||||||||||| ||||||||||    
T  4016900 ccaactattagtgtgttggggggctgcctttgtttttcttattcctataggcaaaccaatttctgtatctggcagatgaagaaatttggagttgaagatt 4016801  T
Q  118 cttggactc 126  Q
    | |||||||    
T  4016800 cctggactc 4016792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 167
Target Start/End: Original strand, 29874450 - 29874602
Alignment:
Q  16 aaccaactattggtgtgttgggg-gactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaag 114  Q
    |||||| ||| |||||||||||| ||||||||||||||||||||| ||||||||||||  |||||  ||||||||||  |||||||||||||||||||||    
T  29874450 aaccaaatataggtgtgttggggcgactgtctttgtttttcttattgttacaaggaaactgatttcattatatggcaaatgaagaaatttggggttgaag 29874549  T
Q  115 attcttggactccattccctagaattagttataacgatcttcaaattgattat 167  Q
    |||||||||||||||| | || |||||||||| |  |||||||||||||||||    
T  29874550 attcttggactccattacttaaaattagttatcaaaatcttcaaattgattat 29874602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 29859395 - 29859536
Alignment:
Q  17 accaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagat 116  Q
    |||||||||||||||||||||||||  |||||||||||||||| ||||||||||||  ||||| ||||||||| |  ||||||||||||| |||||||||    
T  29859395 accaactattggtgtgttgggggaccatctttgtttttcttattgttacaaggaaattgatttcgttatatgggagatgaagaaatttggagttgaagat 29859494  T
Q  117 tcttggactccattccctagaattagttataacgatcttcaa 158  Q
    |||||||| ||||| | || |||||||||| || ||||||||    
T  29859495 tcttggaccccatttcttaaaattagttatcacaatcttcaa 29859536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 167
Target Start/End: Complemental strand, 29922125 - 29921972
Alignment:
Q  14 agaaccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaa 113  Q
    |||||||||  ||||||||||||||| ||| |||||||||||||||  |||||| ||||  ||||| |||||||||||  ||||||||||||||| ||||    
T  29922125 agaaccaaccgttggtgtgttggggggctgcctttgtttttcttatgcttacaaagaaactgattttgttatatggcagatgaagaaatttggggatgaa 29922026  T
Q  114 gattcttggactccattccctagaattagttataacgatcttcaaattgattat 167  Q
    ||||||||| ||| ||||| ||||||||||||| |  |||||| ||| ||||||    
T  29922025 gattcttggtctcaattccttagaattagttatcaaaatcttctaatagattat 29921972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 25 - 167
Target Start/End: Original strand, 29867188 - 29867327
Alignment:
Q  25 ttggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagattcttggac 124  Q
    ||||||||||||||||||| |||||||||||||||  |   |||||||  |||||  ||||||||||  |||||||||| ||||||||||||||||||||    
T  29867188 ttggtgtgttgggggactgcctttgtttttcttattct---aaggaaactgattttattatatggcaaatgaagaaattcggggttgaagattcttggac 29867284  T
Q  125 tccattccctagaattagttataacgatcttcaaattgattat 167  Q
    || ||||| ||||||||||||  |  |||||||||||||||||    
T  29867285 tcaattccttagaattagttaccataatcttcaaattgattat 29867327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 167
Target Start/End: Original strand, 29881205 - 29881347
Alignment:
Q  25 ttggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagattcttggac 124  Q
    |||||||||||| |||||| ||||| |||| |||| ||||||||||||  |||||  || | |||||  |||||||||||||||||||||||||||||||    
T  29881205 ttggtgtgttggaggactgcctttgcttttgttattgttacaaggaaactgattttattgtttggcaaatgaagaaatttggggttgaagattcttggac 29881304  T
Q  125 tccattccctagaattagttataacgatcttcaaattgattat 167  Q
    || ||||| ||||||||||||  |   ||||||||||||||||    
T  29881305 tcaattccttagaattagttaccatagtcttcaaattgattat 29881347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 45 - 160
Target Start/End: Complemental strand, 29454204 - 29454089
Alignment:
Q  45 ctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccctagaattagtt 144  Q
    |||||||||||||||  ||||||||||  |||||| ||||||||||   ||| ||||||||| ||||||||||||||||||| ||||  || ||||||||    
T  29454204 ctttgtttttcttattcttacaaggaacccgattttgttatatggcggatgatgaaatttggagttgaagattcttggactcaattctttaaaattagtt 29454105  T
Q  145 ataacgatcttcaaat 160  Q
    || | |||||||||||    
T  29454104 atcaagatcttcaaat 29454089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 29445774 - 29445676
Alignment:
Q  28 gtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagattcttggactc 126  Q
    |||||||||||| ||  ||||||| |||||||  ||||||||||| ||||||  ||||||||||  ||||| |||| ||||||||||| ||||||||||    
T  29445774 gtgtgttggggggcttcctttgttgttcttatttttacaaggaaaccgattttcttatatggcagatgaaggaattaggggttgaagactcttggactc 29445676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 167
Target Start/End: Complemental strand, 29431071 - 29430980
Alignment:
Q  76 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccctagaattagttataacgatcttcaaattgattat 167  Q
    |||| ||||||||||   ||| ||||||||||| | ||||||||||||| | ||||| || |||||||||| | ||||||||||| ||||||    
T  29431071 attttgttatatggcggatgatgaaatttggggctaaagattcttggacccaattccttaaaattagttatcaggatcttcaaatagattat 29430980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 160
Target Start/End: Original strand, 14076678 - 14076762
Alignment:
Q  76 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccctagaattagttataacgatcttcaaat 160  Q
    |||| |||||||||||  ||||| ||||||| |||||||| |||||||||| ||| | || |||||||||| |  ||||||||||    
T  14076678 atttcgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttcaaat 14076762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 160
Target Start/End: Original strand, 14386706 - 14386790
Alignment:
Q  76 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccctagaattagttataacgatcttcaaat 160  Q
    |||| |||||||||||  ||||| ||||||| |||||||| |||||||||| ||| | || |||||||||| |  ||||||||||    
T  14386706 atttcgttatatggcaaatgaaggaatttggagttgaagactcttggactcaatttcttaaaattagttatcagaatcttcaaat 14386790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 160
Target Start/End: Complemental strand, 660912 - 660833
Alignment:
Q  81 gttatatggcacgtgaagaaatttggggttgaagattcttggactccattccctagaattagttataacgatcttcaaat 160  Q
    |||||||||||  ||||| ||||| | |||||||| |||||||||| ||||| || |||||||||| |  ||||||||||    
T  660912 gttatatggcagatgaaggaatttcgagttgaagagtcttggactcaattccttaaaattagttatcataatcttcaaat 660833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 126
Target Start/End: Original strand, 29106813 - 29106864
Alignment:
Q  75 gatttggttatatggcacgtgaagaaatttggggttgaagattcttggactc 126  Q
    ||||| ||| |||||||  |||||||||||||||||||||| ||||||||||    
T  29106813 gattttgttgtatggcagatgaagaaatttggggttgaagagtcttggactc 29106864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 126
Target Start/End: Original strand, 29899373 - 29899424
Alignment:
Q  75 gatttggttatatggcacgtgaagaaatttggggttgaagattcttggactc 126  Q
    ||||| |||||||||||  |||||||||||||||||||||| || |||||||    
T  29899373 gattttgttatatggcagatgaagaaatttggggttgaagagtcctggactc 29899424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 29920176 - 29920067
Alignment:
Q  13 tagaaccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttga 112  Q
    ||||||||||| ||||||||||||| | ||| |||| || |||||||  ||||||||||| ||| ||  | |||||| |  |||||||||| ||  ||||    
T  29920176 tagaaccaactcttggtgtgttgggaggctgccttttttcttcttattcttacaaggaaaccgaatttataatatggaagatgaagaaattcggacttga 29920077  T
Q  113 agattcttgg 122  Q
    | ||||||||    
T  29920076 atattcttgg 29920067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 19351115 - 19351047
Alignment:
Q  100 aatttggggttgaagattcttggactccattccctagaattagttataacgatcttcaaattgattata 168  Q
    ||||||| ||||| || ||||||||||||||||  | |||||||| | | |||||||| ||||||||||    
T  19351115 aatttggagttgaggagtcttggactccattcctcaaaattagttttcaggatcttcacattgattata 19351047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 123
Target Start/End: Original strand, 29895418 - 29895516
Alignment:
Q  28 gtgtgttgggggactgtctttgtttttcttatcgtt---acaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagattcttgga 123  Q
    |||| ||||| | |||||||||||||||||||  ||   ||||||||| ||| || ||| |||||||  |||||||||||||| | ||||| |||||||    
T  29895418 gtgtcttgggtggctgtctttgtttttcttattcttctgacaaggaaaacgaatttgttttatggcagatgaagaaatttgggatagaagagtcttgga 29895516  T

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Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 25 - 157
Target Start/End: Original strand, 3557675 - 3557807
Alignment:
Q  25 ttggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagattcttggac 124  Q
    ||||||||||| |||||||||||||||||||||||  ||||||||||| ||||||  ||||||||||  ||||| |||||||||||||||| ||||||||    
T  3557675 ttggtgtgttgagggactgtctttgtttttcttattcttacaaggaaaccgattttattatatggcatatgaaggaatttggggttgaagagtcttggac 3557774  T
Q  125 tccattccctagaattagttataacgatcttca 157  Q
    || ||| | || |||||||||| | ||||||||    
T  3557775 tcaatttcttaaaattagttatcatgatcttca 3557807  T

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Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 3565686 - 3565825
Alignment:
Q  18 ccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagatt 117  Q
    |||||| ||||||||||| ||||||| ||||||||||||||| |||| ||| ||| ||||||  ||||||||||  ||||| |||||||||||||||| |    
T  3565686 ccaactgttggtgtgttgagggactgcctttgtttttcttattgttataagaaaaccgattttattatatggcagatgaaggaatttggggttgaagagt 3565785  T
Q  118 cttggactccattccctagaattagttataacgatcttca 157  Q
    ||||||||| ||| | || |||||||||| | ||||||||    
T  3565786 cttggactcaatttcttaaaattagttatcatgatcttca 3565825  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 25 - 167
Target Start/End: Complemental strand, 3561079 - 3560937
Alignment:
Q  25 ttggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagattcttggac 124  Q
    ||||||| |||||||| || |||||||||||||||  ||||||||||| ||||||  |||| |||||  |||| ||||||||||||||||| ||||||||    
T  3561079 ttggtgtcttgggggattgcctttgtttttcttattcttacaaggaaaccgattttattatttggcagatgaaaaaatttggggttgaagagtcttggac 3560980  T
Q  125 tccattccctagaattagttataacgatcttcaaattgattat 167  Q
    || ||| | || |||||||||| | ||||||||| | ||||||    
T  3560979 tcaatttcttaaaattagttatcatgatcttcaattagattat 3560937  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 1686419 - 1686372
Alignment:
Q  12 atagaaccaactattggtgtgttgggggactgtctttgtttttcttat 59  Q
    ||||| |||||| ||||||||||||||||||| |||||||||||||||    
T  1686419 atagagccaactgttggtgtgttgggggactgcctttgtttttcttat 1686372  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 53774840 - 53774910
Alignment:
Q  76 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccctagaattagttat 146  Q
    |||| |||||||||||  ||||| ||||||| |||||||| |||||||||| ||||| || ||||||||||    
T  53774840 attttgttatatggcaaatgaaggaatttggagttgaagagtcttggactcaattccttaaaattagttat 53774910  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 160
Target Start/End: Complemental strand, 11971052 - 11970968
Alignment:
Q  76 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccctagaattagttataacgatcttcaaat 160  Q
    |||| |||||||||||  ||||| ||||||| || ||||| |||||||||| ||| | ||||||||||||| |  ||||||||||    
T  11971052 attttgttatatggcaaatgaaggaatttggagtggaagagtcttggactcaatttcttagaattagttatcataatcttcaaat 11970968  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 53430161 - 53430100
Alignment:
Q  84 atatggcacgtgaagaaatttggggttgaagattcttggactccattccctagaattagtta 145  Q
    ||||||||  ||||||||| |||||  |||||||||||||||| ||||| || |||||||||    
T  53430161 atatggcagatgaagaaatatggggccgaagattcttggactcaattccttaaaattagtta 53430100  T

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Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 12 - 167
Target Start/End: Original strand, 3625670 - 3625825
Alignment:
Q  12 atagaaccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttg 111  Q
    |||||||||| | ||||||||||||||||||| |||||||||||||||  |||||||| || | || |  ||||||||||  ||||||||||||||||||    
T  3625670 atagaaccaaatgttggtgtgttgggggactgcctttgtttttcttattcttacaaggtaacctatcttattatatggcaaatgaagaaatttggggttg 3625769  T
Q  112 aagattcttggactccattccctagaattagttataacgatcttcaaattgattat 167  Q
    |||| |||||||||| ||| | || |||||||||| |  |||||||| | ||||||    
T  3625770 aagagtcttggactcaatttcttaaaattagttatcaaaatcttcaattagattat 3625825  T

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Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 24331027 - 24330919
Alignment:
Q  18 ccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaagatt 117  Q
    |||||||||||||| ||| ||| ||||||||||||||| |||   |||||||||| |||||| ||||||||| |  ||||| ||||||||||||||||||    
T  24331027 ccaactattggtgtattgaggggctgtctttgtttttcatattcgtacaaggaaaccgattttgttatatgggagatgaaggaatttggggttgaagatt 24330928  T
Q  118 cttggactc 126  Q
    |||||||||    
T  24330927 cttggactc 24330919  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 144
Target Start/End: Complemental strand, 29597683 - 29597554
Alignment:
Q  15 gaaccaactattggtgtgttgggggactgtctttgtttttcttatcgttacaaggaaagcgatttggttatatggcacgtgaagaaatttggggttgaag 114  Q
    ||||||||||||| ||| |||  |||| | |||||||||||| | | || ||||||||   |||| |||||||||||  |||   ||||||| ||||||     
T  29597683 gaaccaactattgctgttttgctggaccgcctttgtttttctcaccatttcaaggaaactcattttgttatatggcaaatgattgaatttggagttgaac 29597584  T
Q  115 attcttggactccattccctagaattagtt 144  Q
    | |||||||||| ||||| || ||||||||    
T  29597583 aatcttggactcaattccttaaaattagtt 29597554  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 167
Target Start/End: Original strand, 14514924 - 14514991
Alignment:
Q  100 aatttggggttgaagattcttggactccattccctagaattagttataacgatcttcaaattgattat 167  Q
    ||||||| ||||||||||||||||||| ||||| || |||||||||||   |||||||||| ||||||    
T  14514924 aatttggagttgaagattcttggactcaattccttaaaattagttatatgaatcttcaaatagattat 14514991  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 147
Target Start/End: Complemental strand, 6921420 - 6921349
Alignment:
Q  76 atttggttatatggcacgtgaagaaatttggggttgaagattcttggactccattccctagaattagttata 147  Q
    |||| ||||| |||||  ||||| ||||||| |||||||| |||||||||| ||||| || |||||||||||    
T  6921420 attttgttatctggcaaatgaaggaatttggagttgaagaatcttggactcaattccttaaaattagttata 6921349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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