View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_448 (Length: 219)
Name: NF9985A_low_448
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_448 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 49484186 - 49484365
Alignment:
| Q |
19 |
tctgacatttgtgcgttcttgtgcttcttgcagtattcaatgaccatggccaatattttgctactcactaaagaaagagaaatacgattaacatcaccag |
118 |
Q |
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| T |
49484186 |
tctgacatttgtgcgttcttgtgcttcttgcagtattcaatgaccatggccaatattttgctactcactaaagaaagagaaatacaattaacatcaccag |
49484285 |
T |
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| Q |
119 |
taggatccgtctcaatagcatcctcaattgcttttgacataagtgcaacatcgtagtcaacttcaaacatatccccatcc |
198 |
Q |
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| T |
49484286 |
taggatctgtctcaatagcatcctcaattgtttttgacataagtgcaacatcgtagtcaacttcaaacatatccccatcc |
49484365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 55072247 - 55072199
Alignment:
| Q |
39 |
gtgcttcttgcagtattcaatgaccatggccaatattttgctactcact |
87 |
Q |
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| T |
55072247 |
gtgcttcttgcagtattcaacgaccatgctcaacattttgctattcact |
55072199 |
T |
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