View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_456 (Length: 216)
Name: NF9985A_low_456
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_456 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 54261173 - 54261352
Alignment:
| Q |
19 |
aaatagctaatacataagcgcataagttataattgcaaattaagctgtttatccagatagggcgtatatcttgtgttctcagtattcaaagttcaattgt |
118 |
Q |
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| T |
54261173 |
aaatagctaatacataagcgcataagttataattgcaaattaagctgtttatccatatagggcgtatatcttgtgttctcagtattcaaagttcaattgt |
54261272 |
T |
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| Q |
119 |
ttactaatttataagagtaaaggaaattagcaaaagtttgaaagatcaaactcttaattacttgtttcgctctatgattc |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |
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| T |
54261273 |
ttactaatttataagagtaaaggaaattagcaaaagtttgaaggatcaaactcttaattacttgtttcgctctgtgattc |
54261352 |
T |
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