View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9985A_low_460 (Length: 215)

Name: NF9985A_low_460
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9985A_low_460
NF9985A_low_460
[»] chr1 (17 HSPs)
chr1 (19-194)||(14074443-14074618)
chr1 (19-75)||(9955108-9955164)
chr1 (19-75)||(13276339-13276395)
chr1 (18-73)||(12513283-12513338)
chr1 (19-75)||(9352136-9352192)
chr1 (19-75)||(25146841-25146897)
chr1 (19-75)||(30619075-30619131)
chr1 (19-73)||(19010019-19010073)
chr1 (22-75)||(9327291-9327344)
chr1 (19-76)||(23528655-23528712)
chr1 (19-75)||(12800654-12800710)
chr1 (19-75)||(18304884-18304940)
chr1 (19-75)||(21846341-21846397)
chr1 (21-68)||(16125533-16125580)
chr1 (20-74)||(42180139-42180193)
chr1 (19-75)||(9128913-9128969)
chr1 (19-75)||(34478843-34478899)
[»] chr6 (15 HSPs)
chr6 (19-75)||(7223519-7223575)
chr6 (19-76)||(15528183-15528240)
chr6 (19-75)||(6943533-6943589)
chr6 (19-75)||(26053369-26053425)
chr6 (19-75)||(26073422-26073478)
chr6 (19-75)||(30912485-30912541)
chr6 (19-56)||(23897830-23897867)
chr6 (19-75)||(7918454-7918510)
chr6 (19-75)||(17250057-17250113)
chr6 (19-75)||(17543813-17543869)
chr6 (22-72)||(2912323-2912373)
chr6 (24-68)||(8545043-8545087)
chr6 (19-71)||(10509096-10509148)
chr6 (27-75)||(17103202-17103250)
chr6 (19-75)||(27233350-27233406)
[»] chr5 (8 HSPs)
chr5 (19-75)||(18051603-18051659)
chr5 (19-74)||(23172505-23172560)
chr5 (19-75)||(21059228-21059284)
chr5 (21-76)||(38158329-38158384)
chr5 (19-77)||(20923716-20923774)
chr5 (19-75)||(22645792-22645848)
chr5 (19-75)||(43234868-43234924)
chr5 (19-67)||(27340259-27340307)
[»] chr7 (17 HSPs)
chr7 (19-75)||(11326386-11326442)
chr7 (19-75)||(44944922-44944978)
chr7 (19-75)||(22687737-22687793)
chr7 (19-75)||(24725550-24725606)
chr7 (24-75)||(5715290-5715341)
chr7 (25-75)||(39182260-39182310)
chr7 (19-75)||(7730416-7730471)
chr7 (19-75)||(9685317-9685373)
chr7 (19-75)||(26281382-26281438)
chr7 (19-74)||(5058530-5058585)
chr7 (24-75)||(21846503-21846554)
chr7 (21-76)||(24990146-24990201)
chr7 (19-73)||(8346606-8346660)
chr7 (19-68)||(8571250-8571299)
chr7 (19-75)||(8330118-8330174)
chr7 (19-75)||(8343873-8343929)
chr7 (19-75)||(27221418-27221474)
[»] chr4 (7 HSPs)
chr4 (19-75)||(5362036-5362092)
chr4 (24-75)||(9149813-9149864)
chr4 (19-77)||(8011289-8011347)
chr4 (19-75)||(13023567-13023624)
chr4 (19-75)||(13551695-13551751)
chr4 (19-75)||(4156763-4156819)
chr4 (19-75)||(8889228-8889284)
[»] chr3 (10 HSPs)
chr3 (19-75)||(28745770-28745826)
chr3 (21-74)||(3449366-3449419)
chr3 (19-75)||(27676356-27676412)
chr3 (19-75)||(29067284-29067340)
chr3 (19-75)||(17796377-17796433)
chr3 (19-75)||(19104817-19104873)
chr3 (19-75)||(20756039-20756095)
chr3 (27-75)||(24620284-24620332)
chr3 (19-75)||(24649762-24649818)
chr3 (19-75)||(25870449-25870505)
[»] chr2 (8 HSPs)
chr2 (19-75)||(31238050-31238106)
chr2 (19-75)||(1404783-1404839)
chr2 (19-75)||(36429848-36429904)
chr2 (19-75)||(23863394-23863450)
chr2 (20-75)||(30432419-30432474)
chr2 (19-77)||(19491853-19491913)
chr2 (19-75)||(1690835-1690891)
chr2 (19-79)||(31578001-31578061)
[»] chr8 (10 HSPs)
chr8 (19-75)||(477120-477176)
chr8 (19-75)||(5922049-5922105)
chr8 (19-74)||(29384389-29384444)
chr8 (19-75)||(11879600-11879656)
chr8 (19-75)||(11897016-11897072)
chr8 (19-75)||(17646993-17647049)
chr8 (19-73)||(15294672-15294726)
chr8 (19-73)||(15475041-15475095)
chr8 (19-56)||(22910275-22910312)
chr8 (19-75)||(24056641-24056697)
[»] scaffold0510 (1 HSPs)
scaffold0510 (19-56)||(174-211)
[»] scaffold0186 (1 HSPs)
scaffold0186 (19-75)||(8443-8499)


Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 14074443 - 14074618
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaattactttaccttattagtccacttttggaaggatattttcagat 118  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14074443 tgaagaaagtcgcaaaatcctacattttaggatttaagacgggattttgacaacaattactttaccttattagtccacttttggaaggatattttcagat 14074542  T
Q  119 tgtgggtgtggcacaacgaaatggtggtttctcatcggtgtaaatttggtttgaacacttaacaaaatacaacgcg 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  14074543 tgtgggtgtggcacaacgaaatggtggtttctcatcggtgtaaatttgatttgaacacttaacaaaatacaacgcg 14074618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 9955108 - 9955164
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||||||||||||||||||||| |||||||||||||||   ||||||||||||||||    
T  9955108 tgaagaaagtcgcaaaatcctaaattttaggatttaagttgggattttgacaacaat 9955164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 13276339 - 13276395
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||||||||||||||||||||| ||||||||||||||  | ||||||||||||||||    
T  13276339 tgaagaaagtcgcaaaatcctagattttaggatttaaatcgggattttgacaacaat 13276395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 12513338 - 12513283
Alignment:
Q  18 ctgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaaca 73  Q
    ||||||||||||||||||||||| ||| ||||||||||| | ||||||||||||||    
T  12513338 ctgaagaaagtcgcaaaatcctagattgtaggatttaagtcgggattttgacaaca 12513283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 9352136 - 9352192
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    ||||||||||||||||| |||  ||||||||||||||| | ||||||||||||||||    
T  9352136 tgaagaaagtcgcaaaaccctggattttaggatttaagtcgggattttgacaacaat 9352192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 25146841 - 25146897
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||||||||||||||||| ||  ||||||||||||||| | ||||||||||||||||    
T  25146841 tgaagaaagtcgcaaaattctgaattttaggatttaagtcaggattttgacaacaat 25146897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 30619131 - 30619075
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||||||| ||||||||||||  ||||||||||||||| | ||||||||||||||||    
T  30619131 tgaagaaaatcgcaaaatcctggattttaggatttaagtcgggattttgacaacaat 30619075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 19010019 - 19010073
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaaca 73  Q
    |||| ||||||||||||||||  ||||||||||||||| | ||||||||||||||    
T  19010019 tgaaaaaagtcgcaaaatcctgaattttaggatttaagtccggattttgacaaca 19010073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 9327291 - 9327344
Alignment:
Q  22 agaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||||||||||||| |||| ||||||||||||||| | ||||||| ||||||||    
T  9327291 agaaagtcgcaaaaccctaaattttaggatttaagtcaggattttaacaacaat 9327344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 23528712 - 23528655
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaatt 76  Q
    |||||||||||||||||||||  |||||| ||||||||   |||||||||||||||||    
T  23528712 tgaagaaagtcgcaaaatcctgaattttaagatttaagttgggattttgacaacaatt 23528655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 12800654 - 12800710
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||||||||||| ||||||||| |||||||||||||||   ||||||| ||||||||    
T  12800654 tgaagaaagtcgtaaaatcctaaattttaggatttaagttgggattttcacaacaat 12800710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 18304884 - 18304940
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||||||||||||||||| ||  |||||||||||||||   ||||||||||||||||    
T  18304884 tgaagaaagtcgcaaaatactggattttaggatttaagttgggattttgacaacaat 18304940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 21846341 - 21846397
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||| ||||||||||||||||  ||||||||||||||  | ||||||||||||||||    
T  21846341 tgaaaaaagtcgcaaaatcctggattttaggatttaactcgggattttgacaacaat 21846397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 16125533 - 16125580
Alignment:
Q  21 aagaaagtcgcaaaatcctacattttaggatttaagactggattttga 68  Q
    |||||||||||||||||||  ||||||||||||||| | |||||||||    
T  16125533 aagaaagtcgcaaaatcctgaattttaggatttaagtcaggattttga 16125580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 42180139 - 42180193
Alignment:
Q  20 gaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaa 74  Q
    ||||||||||||||||||||  ||||||| |||||||   |||||||||||||||    
T  42180139 gaagaaagtcgcaaaatcctgaattttagaatttaagttgggattttgacaacaa 42180193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 9128913 - 9128969
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    ||||||||||||||| ||||||  |||||||||||||| |  |||||| ||||||||    
T  9128913 tgaagaaagtcgcaagatcctaatttttaggatttaagtcgtgattttaacaacaat 9128969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 34478843 - 34478899
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    ||||||||||| |||||||| | |||||| |||||||| | ||||||| ||||||||    
T  34478843 tgaagaaagtcacaaaatcccaaattttaagatttaagtcgggattttaacaacaat 34478899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 7223575 - 7223519
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||    
T  7223575 tgaagaaagtcgcaaaatcctaaattttaggatttaagtcgggattttgacaacaat 7223519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 15528183 - 15528240
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaatt 76  Q
    |||||||||||||||||||||  ||||||||||||||| | |||||||||||||||||    
T  15528183 tgaagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaatt 15528240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 6943533 - 6943589
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||||||||||||||||||||  ||||||||||||||| | ||||||||||||||||    
T  6943533 tgaagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaat 6943589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 26053369 - 26053425
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||||||||||||||||||||| |||||| |||||||| | ||||||||||||||||    
T  26053369 tgaagaaagtcgcaaaatcctagattttaagatttaagtcgggattttgacaacaat 26053425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 26073422 - 26073478
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||||||||||||||||||||| |||||| |||||||| | ||||||||||||||||    
T  26073422 tgaagaaagtcgcaaaatcctagattttaagatttaagtcgggattttgacaacaat 26073478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 30912485 - 30912541
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||||||||||||||||||||| |||||||||||||||   ||||||||||||||||    
T  30912485 tgaagaaagtcgcaaaatcctaaattttaggatttaagttgggattttgacaacaat 30912541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 23897867 - 23897830
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaag 56  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  23897867 tgaagaaagtcgcaaaatcctgcattttaggatttaag 23897830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 7918454 - 7918510
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||| ||||||||||||||||  ||||||| ||||||| | ||||||||||||||||    
T  7918454 tgaaaaaagtcgcaaaatcctgaattttagaatttaagtcgggattttgacaacaat 7918510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 17250113 - 17250057
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||||||||| ||||||||||  ||||||||||||||| | ||||||| ||||||||    
T  17250113 tgaagaaagttgcaaaatcctggattttaggatttaagtcgggattttaacaacaat 17250057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 17543813 - 17543869
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||| ||||||||||||||||  ||||||||||||||| |  |||||||||||||||    
T  17543813 tgaaaaaagtcgcaaaatcctgaattttaggatttaagtcgagattttgacaacaat 17543869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 2912323 - 2912373
Alignment:
Q  22 agaaagtcgcaaaatcctacattttaggatttaagactggattttgacaac 72  Q
    ||||||| ||||||||||| |||||| |||||||| | |||||||||||||    
T  2912323 agaaagttgcaaaatcctaaattttaagatttaagtcgggattttgacaac 2912373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 8545043 - 8545087
Alignment:
Q  24 aaagtcgcaaaatcctacattttaggatttaagactggattttga 68  Q
    ||||||||||||||||| ||||||||||||||  | |||||||||    
T  8545043 aaagtcgcaaaatcctaaattttaggatttaaatcgggattttga 8545087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 10509096 - 10509148
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaa 71  Q
    ||||||||||| |||| | ||  ||||||||||||||| ||||||||||||||    
T  10509096 tgaagaaagtcacaaatttctgaattttaggatttaagtctggattttgacaa 10509148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 17103250 - 17103202
Alignment:
Q  27 gtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||||||||||||  |||||| |||||||| | ||||||||||||||||    
T  17103250 gtcgcaaaatcctgaattttaagatttaagtcgggattttgacaacaat 17103202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 27233350 - 27233406
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    ||||||||||| |||||||||  ||||||||||||||| | | | ||||||||||||    
T  27233350 tgaagaaagtcacaaaatcctggattttaggatttaagtcggtagtttgacaacaat 27233406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 18051603 - 18051659
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||    
T  18051603 tgaagaaagtcgcaaaatcctatattttaggatttaagtcgggattttgacaacaat 18051659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 23172505 - 23172560
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaa 74  Q
    |||||||||||||||||||||| ||||||||||||||| | |||||||||||||||    
T  23172505 tgaagaaagtcgcaaaatcctaaattttaggatttaagtcgggattttgacaacaa 23172560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 21059228 - 21059284
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||||||||||||||||||||| ||||||||||||||  | ||||||||||||||||    
T  21059228 tgaagaaagtcgcaaaatcctagattttaggatttaaatcgggattttgacaacaat 21059284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 38158329 - 38158384
Alignment:
Q  21 aagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaatt 76  Q
    |||||||||||||||||||| ||||||||||||||| | | |||||||||||||||    
T  38158329 aagaaagtcgcaaaatcctagattttaggatttaagtcggaattttgacaacaatt 38158384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 20923774 - 20923716
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaatta 77  Q
    |||||||||||||||||| ||  ||||||||||||||| | ||||||||||||||||||    
T  20923774 tgaagaaagtcgcaaaattctggattttaggatttaagtcgggattttgacaacaatta 20923716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 22645792 - 22645848
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||||||||||||||||| ||  ||||||||||||||| | ||||||||||||||||    
T  22645792 tgaagaaagtcgcaaaatactggattttaggatttaagtcgggattttgacaacaat 22645848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 43234924 - 43234868
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||||||||||||||||||||  |||||||||||||||   ||||||||||||||||    
T  43234924 tgaagaaagtcgcaaaatcctgaattttaggatttaagttgggattttgacaacaat 43234868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 27340259 - 27340307
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttg 67  Q
    ||||||||||||||||||| || |||||| |||||||| | ||||||||    
T  27340259 tgaagaaagtcgcaaaatcataaattttatgatttaagtcgggattttg 27340307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 11326442 - 11326386
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||||||||||||||||||||| |||||||||||||||   ||||||||||||||||    
T  11326442 tgaagaaagtcgcaaaatcctaaattttaggatttaagttgggattttgacaacaat 11326386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 44944922 - 44944978
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||||||||||||||||||||  ||||||||||||||| | ||||||||||||||||    
T  44944922 tgaagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaat 44944978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 22687737 - 22687793
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||||||||||||||| ||||  ||||||||||||||| | ||||||||||||||||    
T  22687737 tgaagaaagtcgcaaattcctgaattttaggatttaagtcgggattttgacaacaat 22687793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 24725550 - 24725606
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||||||||||| |||||| |  ||||||||||||||| ||||||||||||||||||    
T  24725550 tgaagaaagtcgtaaaatcttggattttaggatttaagtctggattttgacaacaat 24725606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 5715341 - 5715290
Alignment:
Q  24 aaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    ||||||||||||||||  ||||||||||||||| | ||||||||||||||||    
T  5715341 aaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaat 5715290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 39182310 - 39182260
Alignment:
Q  25 aagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||||||||||||||| ||||||||||||||| | |||||||| |||||||    
T  39182310 aagtcgcaaaatcctagattttaggatttaagtcaggattttgtcaacaat 39182260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 7730416 - 7730471
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    ||||||||||||||||| |||  ||||||||||||||| | ||||||||||||||||    
T  7730416 tgaagaaagtcgcaaaa-cctggattttaggatttaagtcaggattttgacaacaat 7730471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 9685317 - 9685373
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||| ||||||||||||||||| |||||||||| |||| |  |||||||||||||||    
T  9685317 tgaaaaaagtcgcaaaatcctaaattttaggatataagtcgagattttgacaacaat 9685373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 26281382 - 26281438
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||||||||||||||||||||  |||||| |||||||| | | ||||||||||||||    
T  26281382 tgaagaaagtcgcaaaatcctgaattttatgatttaagtcggaattttgacaacaat 26281438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 5058585 - 5058530
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaa 74  Q
    |||||||| ||||||||| ||  ||||||||||||||| | |||||||||||||||    
T  5058585 tgaagaaaatcgcaaaattctgaattttaggatttaagtcgggattttgacaacaa 5058530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 21846503 - 21846554
Alignment:
Q  24 aaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    ||||||||||||||||  ||||||| ||||||| | ||||||||||||||||    
T  21846503 aaagtcgcaaaatcctgaattttagaatttaagtcgggattttgacaacaat 21846554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 24990146 - 24990201
Alignment:
Q  21 aagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaatt 76  Q
    ||||||||| |||||||||| ||||| ||||||||| | | |||||||||||||||    
T  24990146 aagaaagtcacaaaatcctaaatttttggatttaagtcggaattttgacaacaatt 24990201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 8346606 - 8346660
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaaca 73  Q
    |||||||||||||||||||||| ||||||  ||||| | | ||||||||||||||    
T  8346606 tgaagaaagtcgcaaaatcctaaattttaatatttaggtcaggattttgacaaca 8346660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 8571299 - 8571250
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttga 68  Q
    |||||||||||||||||||||  |||||| |||||||| | |||||||||    
T  8571299 tgaagaaagtcgcaaaatcctggattttatgatttaagtcgggattttga 8571250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 8330118 - 8330174
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    ||||||||||||||||||| |  ||||||| ||||| | | ||||||||||||||||    
T  8330118 tgaagaaagtcgcaaaatcatgaattttagaatttaggtcaggattttgacaacaat 8330174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 8343873 - 8343929
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    ||||||||||||||||||||   ||||||||||||| | |  |||||||||||||||    
T  8343873 tgaagaaagtcgcaaaatccaggattttaggatttaggccaagattttgacaacaat 8343929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 27221474 - 27221418
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||||||||||||||||||||  ||||||| |||||||   ||||||| ||||||||    
T  27221474 tgaagaaagtcgcaaaatcctgaattttagaatttaagttgggattttaacaacaat 27221418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 5362036 - 5362092
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||||||||||||||||||||  ||||||||||||||| | ||||||||||||||||    
T  5362036 tgaagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaat 5362092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 9149813 - 9149864
Alignment:
Q  24 aaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    ||||||||||||||||| ||||||||||||||| | |||||||||| |||||    
T  9149813 aaagtcgcaaaatcctaaattttaggatttaagtcgggattttgaccacaat 9149864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 8011289 - 8011347
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaatta 77  Q
    |||||||||||||||||||||  |||||||||||| ||   ||||||||||||||||||    
T  8011289 tgaagaaagtcgcaaaatcctgaattttaggatttgagttgggattttgacaacaatta 8011347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 13023624 - 13023567
Alignment:
Q  19 tgaagaaagtcgcaaaatcctaca-ttttaggatttaagactggattttgacaacaat 75  Q
    |||||||||||||||||||||| | ||||||||||||||   ||||||||||||||||    
T  13023624 tgaagaaagtcgcaaaatcctaaatttttaggatttaagttgggattttgacaacaat 13023567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 13551695 - 13551751
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||| ||||||||||||||||| |||||||||| |||| |  |||||||||||||||    
T  13551695 tgaaaaaagtcgcaaaatcctaaattttaggatataagtcgagattttgacaacaat 13551751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 4156819 - 4156763
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||| ||||||  ||||||||| |||||| |||||||| | ||||||||||||||||    
T  4156819 tgaataaagtcataaaatcctaaattttaagatttaagtcgggattttgacaacaat 4156763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 8889284 - 8889228
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||||||| || |||||||||  ||||||||||||||| | ||||||||||| ||||    
T  8889284 tgaagaaattcacaaaatcctggattttaggatttaagtcgggattttgacatcaat 8889228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 28745826 - 28745770
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||||||||||||||||||||| ||||||||||||||  | ||||||||||||||||    
T  28745826 tgaagaaagtcgcaaaatcctaaattttaggatttaaatcgggattttgacaacaat 28745770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 3449366 - 3449419
Alignment:
Q  21 aagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaa 74  Q
    |||||||||||||||||||  ||||||||||||||| | |||||||||||||||    
T  3449366 aagaaagtcgcaaaatcctgaattttaggatttaagtcgggattttgacaacaa 3449419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 27676412 - 27676356
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||| |||||||||||||||| ||||||| |||||||| | ||||||||||||||||    
T  27676412 tgaataaagtcgcaaaatcctgcattttacgatttaagtcaggattttgacaacaat 27676356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 29067340 - 29067284
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||||||||||||||||||||  ||||||| ||||||| | ||||||||||||||||    
T  29067340 tgaagaaagtcgcaaaatcctgaattttagaatttaagtcgggattttgacaacaat 29067284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 17796433 - 17796377
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||| ||||||| ||||||||| |||||| |||||||| | | ||||||||||||||    
T  17796433 tgaataaagtcgtaaaatcctagattttatgatttaagtcggaattttgacaacaat 17796377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 19104873 - 19104817
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||| ||||||| ||||||||| |||||| |||||||| | | ||||||||||||||    
T  19104873 tgaataaagtcgtaaaatcctagattttatgatttaagtcggaattttgacaacaat 19104817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 20756095 - 20756039
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||||||| ||||||||||||  ||||||  ||||||| | ||||||||||||||||    
T  20756095 tgaagaaaatcgcaaaatcctgaattttataatttaagtcgggattttgacaacaat 20756039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 24620284 - 24620332
Alignment:
Q  27 gtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    ||||||||||| || ||||||||||||||| | | ||||||||||||||    
T  24620284 gtcgcaaaatcttaaattttaggatttaagtcggaattttgacaacaat 24620332  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 24649762 - 24649818
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    ||||| |||||  ||||||||| |||||| |||||||| | ||||||||||||||||    
T  24649762 tgaagcaagtcaaaaaatcctagattttacgatttaagtcgggattttgacaacaat 24649818  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 25870449 - 25870505
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    ||||||||||| ||||||| |  ||||||||||||||| |  |||||||||||||||    
T  25870449 tgaagaaagtcacaaaatcttggattttaggatttaagtcgagattttgacaacaat 25870505  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 31238050 - 31238106
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||||||||| ||||||||||| ||||||||||||||| | ||||||||||||||||    
T  31238050 tgaagaaagtggcaaaatcctagattttaggatttaagtcgggattttgacaacaat 31238106  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 1404839 - 1404783
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    ||||||||||| |||||||||| ||||||| ||||||| | ||||||||||||||||    
T  1404839 tgaagaaagtcacaaaatcctaaattttagaatttaagtcgggattttgacaacaat 1404783  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 36429904 - 36429848
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||||||||||||||||||||| ||| |||||||||||   ||||||||||||||||    
T  36429904 tgaagaaagtcgcaaaatcctagattataggatttaagttgggattttgacaacaat 36429848  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 23863394 - 23863450
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||||||||||||||||| ||  ||||||| ||||||| | ||||||||||||||||    
T  23863394 tgaagaaagtcgcaaaattctcgattttagaatttaagtcgggattttgacaacaat 23863450  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 30432474 - 30432419
Alignment:
Q  20 gaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    ||||||||||| ||||||||| ||||||| ||||||  | ||||||||||||||||    
T  30432474 gaagaaagtcgaaaaatcctagattttagaatttaaatcaggattttgacaacaat 30432419  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 19491913 - 19491853
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattt--taggatttaagactggattttgacaacaatta 77  Q
    |||||||||||||||||||||| ||||  ||||||||||  |  |||||||||||||||||    
T  19491913 tgaagaaagtcgcaaaatcctagattttataggatttaattcgagattttgacaacaatta 19491853  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 1690835 - 1690891
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    ||||||||||| |||||||||| |||||| |||||||| | |  |||||||||||||    
T  1690835 tgaagaaagtcacaaaatcctaaattttaagatttaagtcggagttttgacaacaat 1690891  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 31578061 - 31578001
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaattact 79  Q
    |||||||| |||||||||| || ||||||  ||||||| | |||||||||||||| |||||    
T  31578061 tgaagaaaatcgcaaaatcttaaattttaacatttaagtcgggattttgacaacagttact 31578001  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 477120 - 477176
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    ||||||||||| |||||||||  ||||||||||||||| | ||||||||||||||||    
T  477120 tgaagaaagtcacaaaatcctggattttaggatttaagtcaggattttgacaacaat 477176  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 5922105 - 5922049
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    ||||||||||| |||||||||  ||||||||||||||| | ||||||||||||||||    
T  5922105 tgaagaaagtcacaaaatcctggattttaggatttaagtcgggattttgacaacaat 5922049  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 29384389 - 29384444
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaa 74  Q
    |||||||||||||||||||  | ||||||||||||||  |||||||||||||||||    
T  29384389 tgaagaaagtcgcaaaatctaagattttaggatttaaacctggattttgacaacaa 29384444  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 11879656 - 11879600
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||||||||| ||||||||||  ||||||||||||||| | | ||||||||||||||    
T  11879656 tgaagaaagttgcaaaatcctgaattttaggatttaagtcagaattttgacaacaat 11879600  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 11897072 - 11897016
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||||||||| ||||||||||  ||||||||||||||| | | ||||||||||||||    
T  11897072 tgaagaaagttgcaaaatcctgaattttaggatttaagtcagaattttgacaacaat 11897016  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 17647049 - 17646993
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||||||||||||||||||||  |||||| |||||||| | | ||||||||||||||    
T  17647049 tgaagaaagtcgcaaaatcctgaattttatgatttaagtcggaattttgacaacaat 17646993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 15294726 - 15294672
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaaca 73  Q
    |||| ||||||||||||||||  ||||||||||||||| | ||||||| ||||||    
T  15294726 tgaaaaaagtcgcaaaatcctgaattttaggatttaagtcgggatttttacaaca 15294672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 15475095 - 15475041
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaaca 73  Q
    |||| ||||||||||||||||  ||||||||||||||| | ||||||| ||||||    
T  15475095 tgaaaaaagtcgcaaaatcctgaattttaggatttaagtcgggatttttacaaca 15475041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 22910275 - 22910312
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaag 56  Q
    |||||||||||| ||||||||| |||||||||||||||    
T  22910275 tgaagaaagtcgtaaaatcctaaattttaggatttaag 22910312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 24056641 - 24056697
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    |||| ||||||||||||||||  ||||||||||||||| |  |||||||| ||||||    
T  24056641 tgaataaagtcgcaaaatcctggattttaggatttaagtcaagattttgataacaat 24056697  T

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Target: scaffold0510 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 174 - 211
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaag 56  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  174 tgaagaaagtcgcaaaatcctgcattttaggatttaag 211  T

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Target: scaffold0186 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 8499 - 8443
Alignment:
Q  19 tgaagaaagtcgcaaaatcctacattttaggatttaagactggattttgacaacaat 75  Q
    ||||||||||||||||||| |  |||||||||||||||   ||||||||||||||||    
T  8499 tgaagaaagtcgcaaaatcgtggattttaggatttaagtagggattttgacaacaat 8443  T

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