View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_461 (Length: 215)
Name: NF9985A_low_461
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_461 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 14 - 213
Target Start/End: Original strand, 32724718 - 32724917
Alignment:
| Q |
14 |
gaaacatgagaagacaagaatgatacagagatgatgggtttacatgtttattagagaaagagtaatttttgttttgtatcaatggtgacacaagttattt |
113 |
Q |
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| T |
32724718 |
gaaacatgagaagacaagaatgatagagagattatgggtttacatgtttattagagaaagagtaatttttgttttgtatcaatggtgacataagttattt |
32724817 |
T |
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| Q |
114 |
gggttaacgggctttttagaaaggggttgaaggtagtggatgttaaaagattctttctcagcatttcacggttcagagaaaaaagtatggttcttatgtc |
213 |
Q |
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| T |
32724818 |
gggttaacaggctttttagaaaggtgttgaaggtaatggatgttaaaagattctttctcagcatttcatggttcagagaaaaaagtatggttcttatgtc |
32724917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 32723264 - 32723453
Alignment:
| Q |
15 |
aaacatgagaagacaagaatgatacagagatgatgggtttacatgtttattagagaaagagtaatttttgttttgtatcaatggtgacacaagttatttg |
114 |
Q |
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| T |
32723264 |
aaacatgagaagacaggaaagatagagagatgatgggtttacaggtttagtagagaaacagtaatttttgttttatattaatggtgacacaagttatttg |
32723363 |
T |
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| Q |
115 |
ggt--taacgggctttttagaaaggggttgaaggtagtggatgttaaaagattctttctcagcatttcacggttcagagaaaaaagtatg |
202 |
Q |
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| T |
32723364 |
agttataacatgtttttgagaaaggtgttgaaggtagtggatgttacaagattctttatcagcatttcatggttcagatgaaaaagtatg |
32723453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 79 - 211
Target Start/End: Original strand, 4001942 - 4002074
Alignment:
| Q |
79 |
tttttgttttgtatcaatggtgacacaagttatttgggttaacgggctttttagaaaggggttgaaggtagtggatgttaaaagattctttctcagcatt |
178 |
Q |
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| T |
4001942 |
ttttttttttttatcaatggtaacgcaagttatttgggttaacatgtttttgagaaagatgttgaaggtagtggatgttaaaagattctttctcataatt |
4002041 |
T |
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| Q |
179 |
tcacggttcagagaaaaaagtatggttcttatg |
211 |
Q |
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| T |
4002042 |
tcatggtttagagaaaaaagtatggttcttatg |
4002074 |
T |
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Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 15 - 202
Target Start/End: Original strand, 15719989 - 15720179
Alignment:
| Q |
15 |
aaacatgagaagacaagaatgatacagagatgatgggtttacatgtttattagagaaagagtaa-tttttgttttgtatcaatggtgacacaagttattt |
113 |
Q |
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| T |
15719989 |
aaacatgagaagacaagaaagatagagagatgatgggtgtacaggtttagtagagaaagagtaattttttgttttgtattaatggtgacacaagttattt |
15720088 |
T |
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| Q |
114 |
gggt--taacgggctttttagaaaggggttgaaggtagtggatgttaaaagattctttctcagcatttcacggttcagagaaaaaagtatg |
202 |
Q |
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| T |
15720089 |
gggttataacaagtttttgagaaaggtgttgaaggtagtggatgttacaagattctttctcagtatttcatggttcagatgaaaaagtatg |
15720179 |
T |
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