View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_462 (Length: 214)
Name: NF9985A_low_462
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_462 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 24 - 210
Target Start/End: Original strand, 12422946 - 12423132
Alignment:
| Q |
24 |
cctcctctcaatgtgtgtaattacaaaatgaaataaagaaagaaaagagaatcatgttgaatctgatgatggtgagcgaggaaacaagtattggaatcat |
123 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12422946 |
cctcctctcaatttgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctggtgatggtgagcgaggaaacaagtattggaatcat |
12423045 |
T |
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| Q |
124 |
ggatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaattttcaaggaggataatcttgttgatgttt |
210 |
Q |
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| T |
12423046 |
ggatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaattttcaaggaggatgatcttgttgatgttt |
12423132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 24 - 210
Target Start/End: Original strand, 8719361 - 8719547
Alignment:
| Q |
24 |
cctcctctcaatgtgtgtaattacaaaatgaaataaagaaagaaaagagaatcatgttgaatctgatgatggtgagcgaggaaacaagtattggaatcat |
123 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8719361 |
cctcctctcaatttgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctggtgatggtgagcgaggaaacaagtattggaatcat |
8719460 |
T |
|
| Q |
124 |
ggatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaattttcaaggaggataatcttgttgatgttt |
210 |
Q |
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| T |
8719461 |
ggatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaattttcaaggaggatgatcttgttgatgttt |
8719547 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 24 - 210
Target Start/End: Original strand, 38460345 - 38460531
Alignment:
| Q |
24 |
cctcctctcaatgtgtgtaattacaaaatgaaataaagaaagaaaagagaatcatgttgaatctgatgatggtgagcgaggaaacaagtattggaatcat |
123 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38460345 |
cctcctctcaatttgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctggtgatggtgagcgaggaaacaagtattggaatcat |
38460444 |
T |
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| Q |
124 |
ggatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaattttcaaggaggataatcttgttgatgttt |
210 |
Q |
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| T |
38460445 |
ggatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaattttcaaggaggatgatcttgttgaagttt |
38460531 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 24 - 210
Target Start/End: Complemental strand, 38459811 - 38459625
Alignment:
| Q |
24 |
cctcctctcaatgtgtgtaattacaaaatgaaataaagaaagaaaagagaatcatgttgaatctgatgatggtgagcgaggaaacaagtattggaatcat |
123 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38459811 |
cctcctctcaatttgtgtaattgcaaaatgaaataaagaaagaaaagagaatcgtgttgaatctggtgatggtgagcgaggaaacaagtattggaatcat |
38459712 |
T |
|
| Q |
124 |
ggatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaattttcaaggaggataatcttgttgatgttt |
210 |
Q |
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| T |
38459711 |
ggatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaattttcaaggaggatgatcttgttgaagttt |
38459625 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 24 - 210
Target Start/End: Complemental strand, 30626873 - 30626687
Alignment:
| Q |
24 |
cctcctctcaatgtgtgtaattacaaaatgaaataaagaaagaaaagagaatcatgttgaatctgatgatggtgagcgaggaaacaagtattggaatcat |
123 |
Q |
| |
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|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
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| T |
30626873 |
cctcctctcaatttgtgtaattgcaaaatgaaataaagaaagaaaagagaatcatgttgaatctggtgatggtgagcgaggaaacaagtattggaatctt |
30626774 |
T |
|
| Q |
124 |
ggatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaattttcaaggaggataatcttgttgatgttt |
210 |
Q |
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| T |
30626773 |
ggatgtcgaattggggatgatgacattttagtggtcttcttaggtcggtgccgttaaatttcaaggaggatgatcttgttgatgttt |
30626687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 153
Target Start/End: Original strand, 34149850 - 34149913
Alignment:
| Q |
90 |
tgatggtgagcgaggaaacaagtattggaatcatggatgtcgaattggggatgatgacatttta |
153 |
Q |
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| T |
34149850 |
tgatggtgagtgtggaaacaagtattggaatcatgggtactgaattggggatgatttcatttta |
34149913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 153
Target Start/End: Complemental strand, 34177274 - 34177211
Alignment:
| Q |
90 |
tgatggtgagcgaggaaacaagtattggaatcatggatgtcgaattggggatgatgacatttta |
153 |
Q |
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| T |
34177274 |
tgatggtgagtgtggaaacaagtattggaatcatgggtactgaattggggatgatttcatttta |
34177211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 31279146 - 31279094
Alignment:
| Q |
156 |
ggtcttcttaggtcggtgccgttaattttcaaggaggataatcttgttgatgt |
208 |
Q |
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||||||||||||||| || ||||| |||||||||| ||| || |||||||||| |
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| T |
31279146 |
ggtcttcttaggtcgatgtcgttacttttcaaggaagatgatgttgttgatgt |
31279094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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