View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_469 (Length: 211)
Name: NF9985A_low_469
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_469 |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 12 - 207
Target Start/End: Complemental strand, 7001570 - 7001375
Alignment:
| Q |
12 |
gaagaatatgtatactccctcccactcaagttttgagatattagaggtgctggaggagcaagttttggagtcataatttcatggaagattaaacttatta |
111 |
Q |
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| T |
7001570 |
gaagaaaatgtatactccctcccactcaagttttgagctattagaggtgctggaggagcaagttttggagtcataatttcatggaagattaaacttatta |
7001471 |
T |
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| Q |
112 |
aagttccataaagtgtgacagtgttgaatttgccaaaaacattggatccaaatgcaacgaagcttgctaagggtaaattcatgtaaaaatttatta |
207 |
Q |
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| T |
7001470 |
aagttccataaagtatgacagtgttgaatttgccaaaaacattggatcaaaatgcaacaaagcttgctaagggtaaattcatgtaaaaattgatta |
7001375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 10792877 - 10792924
Alignment:
| Q |
33 |
ccactcaagttttgagatattagaggtgctggaggagcaagttttgga |
80 |
Q |
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| T |
10792877 |
ccactcatgttttgagctattagaggaggtggaggagcaagttttgga |
10792924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 4e-40; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 50 - 177
Target Start/End: Complemental strand, 38061876 - 38061749
Alignment:
| Q |
50 |
tattagaggtgctggaggagcaagttttggagtcataatttcatggaagattaaacttattaaagttccataaagtgtgacagtgttgaatttgccaaaa |
149 |
Q |
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| T |
38061876 |
tattagaggaggtggaggagcaagttttggagtcataatttcatggaaggttaaacttgttcaagttccatcaagtgtgtcagtgttcaatgtgccaaaa |
38061777 |
T |
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| Q |
150 |
acattggatccaaatgcaacgaagcttg |
177 |
Q |
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| T |
38061776 |
acattggatcaaaatgcaacaaagcttg |
38061749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 41 - 176
Target Start/End: Original strand, 38058569 - 38058704
Alignment:
| Q |
41 |
gttttgagatattagaggtgctggaggagcaagttttggagtcataatttcatggaagattaaacttattaaagttccataaagtgtgacagtgttgaat |
140 |
Q |
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| T |
38058569 |
gttttgggctattagaggtggtggaggagcaagttttggagtcataatttcatggaagattaaacttgttcaagttccatcaattgtgacagtcttcaat |
38058668 |
T |
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| Q |
141 |
ttgccaaaaacattggatccaaatgcaacgaagctt |
176 |
Q |
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| T |
38058669 |
gttccaaaaacattggaacacaatgcaacaaagctt |
38058704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 50 - 177
Target Start/End: Original strand, 38086416 - 38086543
Alignment:
| Q |
50 |
tattagaggtgctggaggagcaagttttggagtcataatttcatggaagattaaacttattaaagttccataaagtgtgacagtgttgaatttgccaaaa |
149 |
Q |
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||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||| || ||||||||| || |||||||||||| | | | |||||| |
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| T |
38086416 |
tattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttgaagttccatcaattgtgacagtgtttactgttccaaaa |
38086515 |
T |
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| Q |
150 |
acattggatccaaatgcaacgaagcttg |
177 |
Q |
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| T |
38086516 |
acattggaacaaaatgcaacaaagcttg |
38086543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 41 - 177
Target Start/End: Original strand, 38072897 - 38073033
Alignment:
| Q |
41 |
gttttgagatattagaggtgctggaggagcaagttttggagtcataatttcatggaagattaaacttattaaagttccataaagtgtgacagtgttgaat |
140 |
Q |
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| T |
38072897 |
gttttgggctattagaggtggtggaggagcaagttttggtgtcatagtttcatggaagattaaacttgttcaagttccatcaactgtaacggtgtttact |
38072996 |
T |
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| Q |
141 |
ttgccaaaaacattggatccaaatgcaacgaagcttg |
177 |
Q |
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| T |
38072997 |
gttccaagaacattggaacaaaatgcaacaaagcttg |
38073033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 38081991 - 38082060
Alignment:
| Q |
50 |
tattagaggtgctggaggagcaagttttggagtcataatttcatggaagattaaacttattaaagttcca |
119 |
Q |
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| T |
38081991 |
tattagaggtggtggaggagcaagttttggagtcataatttcatggaagataaaacttgttgaagttcca |
38082060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 34268758 - 34268711
Alignment:
| Q |
33 |
ccactcaagttttgagatattagaggtgctggaggagcaagttttgga |
80 |
Q |
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| T |
34268758 |
ccactcatgttttgagctattagaggaggtggaggagcaagttttgga |
34268711 |
T |
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