View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_47 (Length: 400)
Name: NF9985A_low_47
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 2 - 392
Target Start/End: Complemental strand, 51365490 - 51365097
Alignment:
| Q |
2 |
atataaggagtagaatggctctcatgtgcgaatgtttcaaaggcaaaaatgccaccgtataagttctcatacatttaatcagagactctcaacaaaccct |
101 |
Q |
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| T |
51365490 |
atataaggtgtagaatggctctcatgtgcgaatgtttcaaagtcaaaaatgccaccgtagaagttcccatacatttaatatgagactctcaacataccct |
51365391 |
T |
|
| Q |
102 |
tacactcctgccagatctttaaaggctcaaatacgcttcaaactcctaaacttcacttactaagtccctccattatggtaagggcttcatagcctcattc |
201 |
Q |
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|||||||| |||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51365390 |
tacactccggccatatctttaaaggctcaaataagctttaaactcctaaacttcacttactaagtccctccattatggtaagggcttcatagcctcattc |
51365291 |
T |
|
| Q |
202 |
tttttgtaaaccgataatgtgttgatataatgcgtatagaaattttatttcattatttgaatggaagactctttagtatcgggtgctttatgacgccaaa |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
51365290 |
tttttgtaaaccgataatgtgttgatataatgcgtatagaaattttatttcattatttgaatgggggactctttagtatcgggtgctttatgacgccaaa |
51365191 |
T |
|
| Q |
302 |
catgtgggttgaggccaagttatgagggcctacataaattgatagttgttcata---tagtggtctgttatcacaaatcttttccgtctatgat |
392 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
51365190 |
catgtgggttgaggccaagttgtgagggcctacataaattgacagttgttcatatcttagtggtctgttatcacaaatctttcccgtctatgat |
51365097 |
T |
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