View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_476 (Length: 208)
Name: NF9985A_low_476
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_476 |
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Alignment Details
Target: chr4 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 38147105 - 38146930
Alignment:
| Q |
18 |
aaataaatcattccactctcccattcaccaaatcaagattcctccaactttcattaaatatcaaattcataatagtatagttacaattcttttacatcag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38147105 |
aaataaatcattccactctcccattcaccaaatcaagattcctccaactttcattaaatatcaaattcataatagtatagttacaattcttttacatcag |
38147006 |
T |
|
| Q |
118 |
aatcatatttagaaaacccacatccttnnnnnnnnnnntaccactagttgcactacactctttgcttgaacaccaaac |
195 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| || ||||| |
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| T |
38147005 |
aatcatatttagaaaacccacatcctt--aaaaaaaaataccactagttgcactacactttttgcttgaccatcaaac |
38146930 |
T |
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