View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_477 (Length: 207)
Name: NF9985A_low_477
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_477 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 6 - 187
Target Start/End: Complemental strand, 6073749 - 6073568
Alignment:
| Q |
6 |
acttccatcctcctcgccggaatctctctccatcaaacctcaccgttcgtccgactttgcctacaccgccatccgcaaatccggcctcaccttccgtgac |
105 |
Q |
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| T |
6073749 |
acttccatcctcctcgccggaatctctctccatcaaacctcatcgttcctccgacttcgcctacaccgccatccgcaaatccggcctcaccttccgtgac |
6073650 |
T |
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| Q |
106 |
ttccatctcctccgccgtataggcgccggcgacataggcaccgtttacctctgtcgcctccgtgactcctccgcaaatgaac |
187 |
Q |
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| T |
6073649 |
ttccatctcctccgccgtataggcgccggcgacataggcaccgtttacctctgtcgcctccgtgactcctcctcaaatgaac |
6073568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 30 - 164
Target Start/End: Original strand, 37170044 - 37170181
Alignment:
| Q |
30 |
tctctccatcaaacctcaccgttcgtccgactttgcctacaccgccatccg---caaatccggcctcaccttccgtgacttccatctcctccgccgtata |
126 |
Q |
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| T |
37170044 |
tctctccctcaaacctcaccgctcctccgacttcgcttactccgccatccgtcgcaagtccgctctcacatttcgtgacttccacctcctccgccgtatc |
37170143 |
T |
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| Q |
127 |
ggcgccggcgacataggcaccgtttacctctgtcgcct |
164 |
Q |
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| T |
37170144 |
ggcgccggagatatcggtactgtttacctatgccgcct |
37170181 |
T |
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