View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9985A_low_48 (Length: 398)

Name: NF9985A_low_48
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9985A_low_48
NF9985A_low_48
[»] chr1 (12 HSPs)
chr1 (1-398)||(47436335-47436736)
chr1 (93-139)||(39940567-39940613)
chr1 (34-100)||(11864682-11864750)
chr1 (27-146)||(36141680-36141800)
chr1 (93-139)||(2492557-2492603)
chr1 (88-138)||(27545396-27545446)
chr1 (106-139)||(33939391-33939424)
chr1 (94-139)||(43929431-43929476)
chr1 (88-120)||(4540696-4540728)
chr1 (91-147)||(10506297-10506353)
chr1 (86-126)||(26545027-26545067)
chr1 (91-146)||(44746653-44746709)
[»] chr3 (14 HSPs)
chr3 (27-116)||(52532696-52532787)
chr3 (23-149)||(1755866-1755995)
chr3 (93-139)||(21970514-21970560)
chr3 (93-139)||(21992950-21992996)
chr3 (106-139)||(336079-336112)
chr3 (102-139)||(24596904-24596941)
chr3 (88-139)||(39836941-39836992)
chr3 (82-131)||(21730147-21730196)
chr3 (106-139)||(38677578-38677611)
chr3 (106-139)||(41743684-41743717)
chr3 (94-131)||(54087483-54087520)
chr3 (93-121)||(22405122-22405150)
chr3 (86-126)||(29019765-29019805)
chr3 (93-137)||(47334723-47334767)
[»] chr5 (14 HSPs)
chr5 (28-114)||(37321302-37321389)
chr5 (27-139)||(1098641-1098754)
chr5 (88-140)||(1100069-1100121)
chr5 (88-139)||(13391544-13391595)
chr5 (93-139)||(15968328-15968374)
chr5 (90-139)||(892564-892613)
chr5 (87-140)||(7613433-7613486)
chr5 (106-139)||(26141768-26141801)
chr5 (86-139)||(36897755-36897808)
chr5 (102-139)||(40515240-40515277)
chr5 (91-139)||(6834043-6834091)
chr5 (88-120)||(17768042-17768074)
chr5 (88-120)||(22398121-22398153)
chr5 (88-120)||(41527008-41527040)
[»] chr7 (11 HSPs)
chr7 (44-141)||(48872972-48873070)
chr7 (104-140)||(30138880-30138916)
chr7 (96-139)||(28949285-28949328)
chr7 (88-139)||(41850613-41850664)
chr7 (94-139)||(4826779-4826824)
chr7 (86-139)||(9555334-9555387)
chr7 (93-138)||(22752574-22752619)
chr7 (94-139)||(27231919-27231964)
chr7 (86-139)||(37101708-37101761)
chr7 (88-120)||(28038575-28038607)
chr7 (80-120)||(41247908-41247948)
[»] chr8 (12 HSPs)
chr8 (92-133)||(9793444-9793485)
chr8 (94-148)||(18959245-18959299)
chr8 (81-139)||(38414295-38414353)
chr8 (104-139)||(7258677-7258712)
chr8 (88-139)||(8793736-8793787)
chr8 (94-139)||(2296556-2296601)
chr8 (94-139)||(12958793-12958838)
chr8 (94-139)||(35011229-35011274)
chr8 (94-139)||(42786381-42786426)
chr8 (94-139)||(44796359-44796404)
chr8 (88-120)||(2627206-2627238)
chr8 (91-139)||(6197905-6197953)
[»] chr2 (8 HSPs)
chr2 (88-139)||(28249013-28249064)
chr2 (88-139)||(5109380-5109431)
chr2 (88-139)||(12873740-12873791)
chr2 (94-139)||(5528173-5528218)
chr2 (106-139)||(26234118-26234151)
chr2 (86-139)||(31102023-31102076)
chr2 (86-139)||(41153189-41153242)
chr2 (94-139)||(45034415-45034460)
[»] scaffold0294 (1 HSPs)
scaffold0294 (102-139)||(13002-13039)
[»] chr4 (12 HSPs)
chr4 (88-147)||(26254559-26254617)
chr4 (88-139)||(53225724-53225775)
chr4 (93-139)||(44755510-44755556)
chr4 (94-139)||(20459326-20459371)
chr4 (86-139)||(39993116-39993169)
chr4 (94-139)||(42804273-42804318)
chr4 (94-139)||(43020773-43020818)
chr4 (94-139)||(47866053-47866098)
chr4 (106-139)||(49481893-49481926)
chr4 (91-139)||(5656512-5656560)
chr4 (91-139)||(37895338-37895386)
chr4 (88-120)||(51313542-51313574)
[»] chr6 (5 HSPs)
chr6 (102-139)||(1302760-1302797)
chr6 (106-139)||(31398320-31398353)
chr6 (88-120)||(7055591-7055623)
chr6 (91-139)||(30438760-30438808)
chr6 (86-126)||(31971108-31971148)


Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 47436736 - 47436335
Alignment:
Q  1 taaatgtgtatttcctctggtctcagttataaacaaaagtttattttttaattcattcaatgactaatgtattagatcgtaatacaaaccaaatacatta 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||     
T  47436736 taaatgtgtatttcctctggtctcggttataaacaaaagtttattttttaattcattcaatgactaatgtattaggtcgtaatacagaccaaatacattg 47436637  T
Q  101 attattgaatgaatctaaaatgtaaacttttacttataactgagactgatggactacgtctttaaattttattgttagaacattaatgtattttcatttt 200  Q
     |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47436636 gttattgaatgaatctacaatgtaaacttttacttataactgagaccgatggactacgtctttaaattttattgttagaacattaatgtattttcatttt 47436537  T
Q  201 ggttac--aaagagattgaagtacgcacactttggattgatgtaaataaaaaatatattgtatcattataatttgatgattctttgagcacatgtatgca 298  Q
    ||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47436536 ggttacaaaaacagattgaagtacgcacactttggattgatgtaaataaaaaatatattgtatcattataatttgatgattctttgagcacatgtatgca 47436437  T
Q  299 tgcagacacaacaggaacttcaccaaaatgatc--ttgggggatgagaatgataagcttcgtgctgaaaatgagatctataagggggcactaaaagacac 396  Q
    |||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47436436 tgcagacacaacaggaacttcaccaaaatgatcttttgagggatgagaatgataagcttcgtgctgaaaatgagatctataagggggcactaaaagacac 47436337  T
Q  397 tt 398  Q
    ||    
T  47436336 tt 47436335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 39940567 - 39940613
Alignment:
Q  93 atacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    |||||||| ||||||||||||||||||| ||||| ||||||||||||    
T  39940567 atacattatttattgaatgaatctaaaaagtaaatttttacttataa 39940613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 100
Target Start/End: Original strand, 11864682 - 11864750
Alignment:
Q  34 caaaagtttatttttt-aattcattcaatgactaatgtattagatc-gtaatacaaaccaaatacatta 100  Q
    |||||||||||||||| |||||||||||||| ||||||||| | || |||||||| | |||||||||||    
T  11864682 caaaagtttattttttgaattcattcaatgattaatgtatttggtctgtaatacataacaaatacatta 11864750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 146
Target Start/End: Complemental strand, 36141800 - 36141680
Alignment:
Q  27 ttataaacaaaagtttattttttaattcattcaatgactaatgtattagatcg-taatacaaaccaaatacattaattattgaatgaatctaaaatgtaa 125  Q
    |||||| |||| ||| | |||| |||||||| ||| | ||||||||| ||||  ||||| | ||||||||||||| ||||| || |||| |||||||| |    
T  36141800 ttataagcaaaggttcacttttaaattcatttaataattaatgtatttgatctataataaagaccaaatacattagttattaaaggaatttaaaatgtta 36141701  T
Q  126 acttttacttataactgagac 146  Q
    | |||| ||||||| ||||||    
T  36141700 atttttgcttataattgagac 36141680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 2492557 - 2492603
Alignment:
Q  93 atacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    |||||| | |||||||||| ||||||||||||||||||| |||||||    
T  2492557 atacatcatttattgaatggatctaaaatgtaaacttttgcttataa 2492603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 27545396 - 27545446
Alignment:
Q  88 accaaatacattaattattgaatgaatctaaaatgtaaacttttacttata 138  Q
    ||||||||||||| ||||||||||||||||||| || ||||| | ||||||    
T  27545396 accaaatacattagttattgaatgaatctaaaaagtgaacttatgcttata 27545446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 139
Target Start/End: Original strand, 33939391 - 33939424
Alignment:
Q  106 tgaatgaatctaaaatgtaaacttttacttataa 139  Q
    |||||||||||||||||||||||||| |||||||    
T  33939391 tgaatgaatctaaaatgtaaacttttgcttataa 33939424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 43929431 - 43929476
Alignment:
Q  94 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    ||||| ||||||||||||||||||||| || ||||||| |||||||    
T  43929431 tacatcaattattgaatgaatctaaaaagttaactttttcttataa 43929476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 120
Target Start/End: Original strand, 4540696 - 4540728
Alignment:
Q  88 accaaatacattaattattgaatgaatctaaaa 120  Q
    |||||||||||||| ||||||||||||||||||    
T  4540696 accaaatacattaagtattgaatgaatctaaaa 4540728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 10506297 - 10506353
Alignment:
Q  91 aaatacattaattattgaatgaatctaaaatgtaaacttttacttataactgagact 147  Q
    |||||||| || |||| ||||||||||||| ||||| ||||||||| || |||||||    
T  10506297 aaatacatcaactattcaatgaatctaaaaagtaaaattttacttaaaaatgagact 10506353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 26545067 - 26545027
Alignment:
Q  86 aaaccaaatacattaattattgaatgaatctaaaatgtaaa 126  Q
    ||||||||||||| ||||||| ||||||||||||| |||||    
T  26545067 aaaccaaatacataaattatttaatgaatctaaaaagtaaa 26545027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 146
Target Start/End: Original strand, 44746653 - 44746709
Alignment:
Q  91 aaatacattaattattgaatgaatct-aaaatgtaaacttttacttataactgagac 146  Q
    ||||| |||||||||||||||||||| |||||||||| ||||  |||||| ||||||    
T  44746653 aaatatattaattattgaatgaatctaaaaatgtaaatttttgtttataattgagac 44746709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 27 - 116
Target Start/End: Original strand, 52532696 - 52532787
Alignment:
Q  27 ttataaacaaaagtttatttttta-attcattcaatgactaatgtattagatcg-taatacaaaccaaatacattaattattgaatgaatct 116  Q
    ||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||  ||||| | |||||||| |||||||||||||| |||||    
T  52532696 ttataaacaaaagttcattttttatattcattcaataactaatgtatttgatctataataaagaccaaatatattaattattgaatcaatct 52532787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 149
Target Start/End: Complemental strand, 1755995 - 1755866
Alignment:
Q  23 tcagttataaacaaaagtttattttttaa--ttcattcaatgactaatgtattagatc-gtaatacaaaccaaatacattaattattgaatgaatctaaa 119  Q
    |||||||||| |||||||| ||||||| |  || ||||||| ||||||||||  | || ||| ||   |||||||||||||||||||||||||||||| |    
T  1755995 tcagttataagcaaaagttaatttttttagatttattcaataactaatgtatctggtctgtattatggaccaaatacattaattattgaatgaatctaga 1755896  T
Q  120 atgtaaacttttacttataactgagactga 149  Q
    |  | || |||| || ||||||||||||||    
T  1755895 aaatgaatttttgctgataactgagactga 1755866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 21970560 - 21970514
Alignment:
Q  93 atacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    |||||| | ||||||||||||| ||||||||||||||||||||||||    
T  21970560 atacatcatttattgaatgaatataaaatgtaaacttttacttataa 21970514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 21992996 - 21992950
Alignment:
Q  93 atacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    |||||| | ||||||||||||| ||||||||||||||||||||||||    
T  21992996 atacatcatttattgaatgaatataaaatgtaaacttttacttataa 21992950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 139
Target Start/End: Complemental strand, 336112 - 336079
Alignment:
Q  106 tgaatgaatctaaaatgtaaacttttacttataa 139  Q
    ||||||||||||||||||||||||||||||||||    
T  336112 tgaatgaatctaaaatgtaaacttttacttataa 336079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 24596941 - 24596904
Alignment:
Q  102 ttattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  24596941 ttattgaatgaatctaaaatgtaaatttttacttataa 24596904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 88 - 139
Target Start/End: Original strand, 39836941 - 39836992
Alignment:
Q  88 accaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    |||| |||||| | ||||||||||||||||||| ||||||||||| ||||||    
T  39836941 accacatacatcatttattgaatgaatctaaaaagtaaacttttatttataa 39836992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 21730147 - 21730196
Alignment:
Q  82 atacaaaccaaatacattaattattgaatgaatctaaaatgtaaactttt 131  Q
    ||||| ||||||||||||||||| ||||| ||||||||| ||||| ||||    
T  21730147 atacagaccaaatacattaattaatgaataaatctaaaaagtaaagtttt 21730196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 139
Target Start/End: Complemental strand, 38677611 - 38677578
Alignment:
Q  106 tgaatgaatctaaaatgtaaacttttacttataa 139  Q
    |||||||||||||||||||||||||| |||||||    
T  38677611 tgaatgaatctaaaatgtaaacttttgcttataa 38677578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 139
Target Start/End: Original strand, 41743684 - 41743717
Alignment:
Q  106 tgaatgaatctaaaatgtaaacttttacttataa 139  Q
    |||||||||| |||||||||||||||||||||||    
T  41743684 tgaatgaatccaaaatgtaaacttttacttataa 41743717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 54087483 - 54087520
Alignment:
Q  94 tacattaattattgaatgaatctaaaatgtaaactttt 131  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  54087483 tacattaattattgaatgaatttaaaatgttaactttt 54087520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 121
Target Start/End: Original strand, 22405122 - 22405150
Alignment:
Q  93 atacattaattattgaatgaatctaaaat 121  Q
    |||||||||||||||||||||||||||||    
T  22405122 atacattaattattgaatgaatctaaaat 22405150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 29019805 - 29019765
Alignment:
Q  86 aaaccaaatacattaattattgaatgaatctaaaatgtaaa 126  Q
    ||||||||||||| ||||||| |||| ||||||||||||||    
T  29019805 aaaccaaatacataaattatttaatgtatctaaaatgtaaa 29019765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 47334723 - 47334767
Alignment:
Q  93 atacattaattattgaatgaatctaaaatgtaaacttttacttat 137  Q
    |||||| | ||| ||||||||||||||||||||| ||||||||||    
T  47334723 atacatcatttaatgaatgaatctaaaatgtaaaattttacttat 47334767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 37321389 - 37321302
Alignment:
Q  28 tataaacaaaagtttattttttaattcattcaatgactaatgtattagatc-gtaatacaaaccaaatacattaattattgaatgaat 114  Q
    ||||||||||||||||||||| |||| |||| |  ||||||||||| ||||  || | |||||||||||||||| |||||||||||||    
T  37321389 tataaacaaaagtttatttttaaatttattctacaactaatgtatttgatctctattgcaaaccaaatacattagttattgaatgaat 37321302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 139
Target Start/End: Complemental strand, 1098754 - 1098641
Alignment:
Q  27 ttataaacaaaagtttatttttta-attcattcaatgactaatgtat-tagatcgtaatacaaaccaaatacattaattattgaatgaatctaaaatgta 124  Q
    |||||| ||||||||||||||||| ||||||| ||| | |||||||| ||| ||   ||| | |||| |||||| | ||||||||||||||||||| ||     
T  1098754 ttataagcaaaagtttattttttagattcatttaataaataatgtatgtag-tctatatatagaccacatacatcatttattgaatgaatctaaaaagtc 1098656  T
Q  125 aacttttacttataa 139  Q
    |||||||||||||||    
T  1098655 aacttttacttataa 1098641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 1100121 - 1100069
Alignment:
Q  88 accaaatacattaattattgaatgaatctaaaatgtaaacttttacttataac 140  Q
    |||| |||||| | ||| |||||||||||||||||||||||||| ||||||||    
T  1100121 accacatacatcatttaatgaatgaatctaaaatgtaaacttttgcttataac 1100069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 88 - 139
Target Start/End: Complemental strand, 13391595 - 13391544
Alignment:
Q  88 accaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    ||||||||||| | ||||||||||||||||||| ||  ||||||||||||||    
T  13391595 accaaatacatcatttattgaatgaatctaaaaagttgacttttacttataa 13391544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 15968374 - 15968328
Alignment:
Q  93 atacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    ||||||||||||||||||||||||||||  | ||||||| |||||||    
T  15968374 atacattaattattgaatgaatctaaaaaattaactttttcttataa 15968328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 139
Target Start/End: Complemental strand, 892613 - 892564
Alignment:
Q  90 caaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    ||||||||||||||||| ||||||||||||| || || |||| |||||||    
T  892613 caaatacattaattattcaatgaatctaaaaagtgaatttttgcttataa 892564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 7613433 - 7613486
Alignment:
Q  87 aaccaaatacattaattattgaatgaatctaaaatgtaaacttttacttataac 140  Q
    |||||||||||| | ||||| ||||||||||||| ||  |||||||||||||||    
T  7613433 aaccaaatacatcatttattaaatgaatctaaaaagttgacttttacttataac 7613486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 139
Target Start/End: Complemental strand, 26141801 - 26141768
Alignment:
Q  106 tgaatgaatctaaaatgtaaacttttacttataa 139  Q
    |||||||||||||||||||||||||| |||||||    
T  26141801 tgaatgaatctaaaatgtaaacttttgcttataa 26141768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 36897808 - 36897755
Alignment:
Q  86 aaaccaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    |||||| |||||| | ||||| ||||||| ||||||||||| ||||||||||||    
T  36897808 aaaccacatacatcatttatttaatgaatttaaaatgtaaatttttacttataa 36897755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 40515277 - 40515240
Alignment:
Q  102 ttattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    ||||||||||||||||||| || |||||||||||||||    
T  40515277 ttattgaatgaatctaaaaagtcaacttttacttataa 40515240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 6834091 - 6834043
Alignment:
Q  91 aaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    |||||||||||||||| |||  |||||||| ||||| ||||||||||||    
T  6834091 aaatacattaattattcaatatatctaaaaagtaaaattttacttataa 6834043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 17768074 - 17768042
Alignment:
Q  88 accaaatacattaattattgaatgaatctaaaa 120  Q
    |||||||||||||| ||||||||||||||||||    
T  17768074 accaaatacattaaatattgaatgaatctaaaa 17768042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 120
Target Start/End: Original strand, 22398121 - 22398153
Alignment:
Q  88 accaaatacattaattattgaatgaatctaaaa 120  Q
    ||||||||||||||||||| |||||||||||||    
T  22398121 accaaatacattaattattcaatgaatctaaaa 22398153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 41527040 - 41527008
Alignment:
Q  88 accaaatacattaattattgaatgaatctaaaa 120  Q
    |||||||||||||| ||||||||||||||||||    
T  41527040 accaaatacattaagtattgaatgaatctaaaa 41527008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 44 - 141
Target Start/End: Original strand, 48872972 - 48873070
Alignment:
Q  44 ttttttaattcattcaatgactaatgtattagatc-gtaatacaaaccaaatacattaattattgaatgaatctaaaatgtaaacttttacttataact 141  Q
    |||||| ||||||||| | |||||| |||| | || |||||||  ||||||||||||||||||||||||||| |||||  | ||||||| |||||||||    
T  48872972 tttttttattcattcattaactaatatatttggtcagtaataccgaccaaatacattaattattgaatgaatttaaaaattgaacttttgcttataact 48873070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 30138880 - 30138916
Alignment:
Q  104 attgaatgaatctaaaatgtaaacttttacttataac 140  Q
    ||||||||||||||||||||||| |||||||||||||    
T  30138880 attgaatgaatctaaaatgtaaatttttacttataac 30138916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 139
Target Start/End: Complemental strand, 28949328 - 28949285
Alignment:
Q  96 cattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    |||||| || |||||||||||||| |||||||||||||||||||    
T  28949328 cattaaataatgaatgaatctaaactgtaaacttttacttataa 28949285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 88 - 139
Target Start/End: Complemental strand, 41850664 - 41850613
Alignment:
Q  88 accaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    ||||||||||||||||||| |||||||||||||  | ||||||| |||||||    
T  41850664 accaaatacattaattattcaatgaatctaaaaaattaactttttcttataa 41850613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 4826824 - 4826779
Alignment:
Q  94 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    ||||| ||||||||||||||||||||| || ||||||| |||||||    
T  4826824 tacatcaattattgaatgaatctaaaaagttaactttttcttataa 4826779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 9555334 - 9555387
Alignment:
Q  86 aaaccaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    |||||| |||||| | ||| ||||||||||||||||||||| |||| |||||||    
T  9555334 aaaccacatacatcatttaatgaatgaatctaaaatgtaaagttttgcttataa 9555387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 22752619 - 22752574
Alignment:
Q  93 atacattaattattgaatgaatctaaaatgtaaacttttacttata 138  Q
    |||||||| |||||||||||||||||||| |||| |||| ||||||    
T  22752619 atacattatttattgaatgaatctaaaatataaatttttgcttata 22752574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 27231919 - 27231964
Alignment:
Q  94 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    ||||| ||||||||||||||||||||| || ||||||| |||||||    
T  27231919 tacatcaattattgaatgaatctaaaaagttaactttttcttataa 27231964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 139
Target Start/End: Complemental strand, 37101761 - 37101708
Alignment:
Q  86 aaaccaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    |||||| |||||| | ||| ||||||||||||||||| ||| ||||||||||||    
T  37101761 aaaccacatacatcatttaatgaatgaatctaaaatgcaaagttttacttataa 37101708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 120
Target Start/End: Original strand, 28038575 - 28038607
Alignment:
Q  88 accaaatacattaattattgaatgaatctaaaa 120  Q
    |||||||||||||| ||||||||||||||||||    
T  28038575 accaaatacattaagtattgaatgaatctaaaa 28038607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 41247948 - 41247908
Alignment:
Q  80 taatacaaaccaaatacattaattattgaatgaatctaaaa 120  Q
    |||||||||||| |||||||||||||| ||| |||||||||    
T  41247948 taatacaaaccatatacattaattattcaataaatctaaaa 41247908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 9793444 - 9793485
Alignment:
Q  92 aatacattaattattgaatgaatctaaaatgtaaacttttac 133  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  9793444 aatacattagttattgaatgaatctaaaatgtaaacttttac 9793485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 148
Target Start/End: Complemental strand, 18959299 - 18959245
Alignment:
Q  94 tacattaattattgaatgaatctaaaatgtaaacttttacttataactgagactg 148  Q
    ||||| |||||||||||||| ||||||||| || ||||||||||||||| |||||    
T  18959299 tacatcaattattgaatgaacctaaaatgttaaattttacttataactgtgactg 18959245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 139
Target Start/End: Original strand, 38414295 - 38414353
Alignment:
Q  81 aatacaaaccaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    |||||| | |||||||||| |||||||||||||||||||| || |||||||| ||||||    
T  38414295 aatacatatcaaatacattcattattgaatgaatctaaaaagtgaacttttatttataa 38414353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 104 - 139
Target Start/End: Original strand, 7258677 - 7258712
Alignment:
Q  104 attgaatgaatctaaaatgtaaacttttacttataa 139  Q
    ||||||||||||||||||||||| ||||||||||||    
T  7258677 attgaatgaatctaaaatgtaaaattttacttataa 7258712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 88 - 139
Target Start/End: Complemental strand, 8793787 - 8793736
Alignment:
Q  88 accaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    ||||||||||| ||||| | |||||||||||||| | |||||||||||||||    
T  8793787 accaaatacatcaattactcaatgaatctaaaatatcaacttttacttataa 8793736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 2296556 - 2296601
Alignment:
Q  94 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    ||||||| | ||||||||||||||||||| ||| ||||||||||||    
T  2296556 tacattattaattgaatgaatctaaaatgcaaaattttacttataa 2296601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 12958838 - 12958793
Alignment:
Q  94 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    ||||| ||||||||||||||||||||| || ||||||| |||||||    
T  12958838 tacatcaattattgaatgaatctaaaaagttaactttttcttataa 12958793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 35011274 - 35011229
Alignment:
Q  94 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    |||||||||||||||||||||||||||  | ||||||| |||||||    
T  35011274 tacattaattattgaatgaatctaaaaaattaactttttcttataa 35011229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 42786426 - 42786381
Alignment:
Q  94 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    ||||| ||||||||||||||||||||| || ||||||| |||||||    
T  42786426 tacatcaattattgaatgaatctaaaaagttaactttttcttataa 42786381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 44796404 - 44796359
Alignment:
Q  94 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    ||||| ||||||||||||||||||||| || ||||||| |||||||    
T  44796404 tacatcaattattgaatgaatctaaaaagttaactttttcttataa 44796359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 2627238 - 2627206
Alignment:
Q  88 accaaatacattaattattgaatgaatctaaaa 120  Q
    ||||||||||||| |||||||||||||||||||    
T  2627238 accaaatacattatttattgaatgaatctaaaa 2627206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 6197905 - 6197953
Alignment:
Q  91 aaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    |||||||||||||||| |||| |||||||| ||||| |||| |||||||    
T  6197905 aaatacattaattatttaatgtatctaaaaagtaaagttttgcttataa 6197953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 139
Target Start/End: Original strand, 28249013 - 28249064
Alignment:
Q  88 accaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    ||||||||||||||||||| ||||||||||||| || ||||||| |||||||    
T  28249013 accaaatacattaattatttaatgaatctaaaaagtcaactttttcttataa 28249064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 88 - 139
Target Start/End: Complemental strand, 5109431 - 5109380
Alignment:
Q  88 accaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    ||||||||||||||||| | ||||||||||||| || ||||||| |||||||    
T  5109431 accaaatacattaattactcaatgaatctaaaaagttaactttttcttataa 5109380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 88 - 139
Target Start/End: Complemental strand, 12873791 - 12873740
Alignment:
Q  88 accaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    ||||||||||||||||| | ||||||||||||| || ||||||| |||||||    
T  12873791 accaaatacattaattacttaatgaatctaaaaagtcaactttttcttataa 12873740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 5528218 - 5528173
Alignment:
Q  94 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    ||||||| ||||||||||||| |||||  |||||||||||||||||    
T  5528218 tacattagttattgaatgaatataaaaaataaacttttacttataa 5528173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 139
Target Start/End: Original strand, 26234118 - 26234151
Alignment:
Q  106 tgaatgaatctaaaatgtaaacttttacttataa 139  Q
    |||||||||||||||||||||||||| |||||||    
T  26234118 tgaatgaatctaaaatgtaaacttttgcttataa 26234151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 31102023 - 31102076
Alignment:
Q  86 aaaccaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    |||||| |||||| | ||| ||||||||||||||||| |||||||| |||||||    
T  31102023 aaaccacatacatcatttaatgaatgaatctaaaatgcaaacttttgcttataa 31102076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 41153189 - 41153242
Alignment:
Q  86 aaaccaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    ||||||||||||| ||||| | ||||||||||||| || ||||||| |||||||    
T  41153189 aaaccaaatacatcaattactcaatgaatctaaaaagtcaactttttcttataa 41153242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 45034460 - 45034415
Alignment:
Q  94 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    ||||| ||||||||||||||||||||| || ||||||| |||||||    
T  45034460 tacatcaattattgaatgaatctaaaaagttaactttttcttataa 45034415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 13002 - 13039
Alignment:
Q  102 ttattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  13002 ttattgaatgaatctaaaaagtaaacttttacttataa 13039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 88 - 147
Target Start/End: Complemental strand, 26254617 - 26254559
Alignment:
Q  88 accaaatacattaattattgaatgaatctaaaatgtaaacttttacttataactgagact 147  Q
    ||||||||||||||||||| ||||||| ||||| |||||| | ||||||||| |||||||    
T  26254617 accaaatacattaattattaaatgaatataaaaagtaaac-tctacttataattgagact 26254559  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 88 - 139
Target Start/End: Original strand, 53225724 - 53225775
Alignment:
Q  88 accaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    ||||||||||||||||||| ||||||||||||| || || |||| |||||||    
T  53225724 accaaatacattaattattcaatgaatctaaaaagtcaattttttcttataa 53225775  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 44755510 - 44755556
Alignment:
Q  93 atacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    |||||||| ||| ||||||||||||||||| ||| ||||||||||||    
T  44755510 atacattatttaatgaatgaatctaaaatgcaaagttttacttataa 44755556  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Original strand, 20459326 - 20459371
Alignment:
Q  94 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    ||||| ||||||||||||||||||||| || ||||||| |||||||    
T  20459326 tacatcaattattgaatgaatctaaaaagttaactttttcttataa 20459371  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 139
Target Start/End: Original strand, 39993116 - 39993169
Alignment:
Q  86 aaaccaaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    |||| |||||||||||||||| ||||||||||||| || |  ||||||||||||    
T  39993116 aaactaaatacattaattattcaatgaatctaaaaagttattttttacttataa 39993169  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 42804318 - 42804273
Alignment:
Q  94 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    ||||| ||||||||||||||||||||| || ||||||| |||||||    
T  42804318 tacatcaattattgaatgaatctaaaaagttaactttttcttataa 42804273  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 43020818 - 43020773
Alignment:
Q  94 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    ||||| ||||||||||||||||||||| || ||||||| |||||||    
T  43020818 tacatcaattattgaatgaatctaaaaagttaactttttcttataa 43020773  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 47866098 - 47866053
Alignment:
Q  94 tacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    ||||| ||||||||||||||||||||| || ||||||| |||||||    
T  47866098 tacatcaattattgaatgaatctaaaaagttaactttttcttataa 47866053  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 139
Target Start/End: Complemental strand, 49481926 - 49481893
Alignment:
Q  106 tgaatgaatctaaaatgtaaacttttacttataa 139  Q
    |||||||||||||||||||||||||| |||||||    
T  49481926 tgaatgaatctaaaatgtaaacttttgcttataa 49481893  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 5656560 - 5656512
Alignment:
Q  91 aaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    |||||||| | | ||| |||||||||||||||||||||||| |||||||    
T  5656560 aaatacatcattaatttaatgaatctaaaatgtaaactttttcttataa 5656512  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 37895338 - 37895386
Alignment:
Q  91 aaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    ||||||||||||||||  |||||||||||| || ||||||| |||||||    
T  37895338 aaatacattaattattctatgaatctaaaaagtcaactttttcttataa 37895386  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 120
Target Start/End: Original strand, 51313542 - 51313574
Alignment:
Q  88 accaaatacattaattattgaatgaatctaaaa 120  Q
    |||||||||||||| ||||||||||||||||||    
T  51313542 accaaatacattaagtattgaatgaatctaaaa 51313574  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 1302797 - 1302760
Alignment:
Q  102 ttattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    |||||||||||| |||||||||||| ||||||||||||    
T  1302797 ttattgaatgaaactaaaatgtaaatttttacttataa 1302760  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 139
Target Start/End: Original strand, 31398320 - 31398353
Alignment:
Q  106 tgaatgaatctaaaatgtaaacttttacttataa 139  Q
    |||||||||||||||||||||||||| |||||||    
T  31398320 tgaatgaatctaaaatgtaaacttttgcttataa 31398353  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 7055623 - 7055591
Alignment:
Q  88 accaaatacattaattattgaatgaatctaaaa 120  Q
    |||||||||||||| ||||||||||||||||||    
T  7055623 accaaatacattaagtattgaatgaatctaaaa 7055591  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 139
Target Start/End: Complemental strand, 30438808 - 30438760
Alignment:
Q  91 aaatacattaattattgaatgaatctaaaatgtaaacttttacttataa 139  Q
    ||||||||||||||||  |||||||||||| || ||||||| |||||||    
T  30438808 aaatacattaattattctatgaatctaaaaagtcaactttttcttataa 30438760  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 31971108 - 31971148
Alignment:
Q  86 aaaccaaatacattaattattgaatgaatctaaaatgtaaa 126  Q
    ||||||||||||| ||||||| |||| ||||||||||||||    
T  31971108 aaaccaaatacataaattatttaatgtatctaaaatgtaaa 31971148  T

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