View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9985A_low_483 (Length: 206)
Name: NF9985A_low_483
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_483 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 156; Significance: 4e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 32107404 - 32107245
Alignment:
| Q |
16 |
atggacattaaatagaatagacaaactacaaagaccttccttcccggccactttcttttcctatatgtccccaccttacataataatacaagtatcactt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32107404 |
atggacattaaatagaatagacaaactacaaagaccttccttcccggccactttcttttcctatatgtccccaccttacataataatacaagtatcactt |
32107305 |
T |
|
| Q |
116 |
caacatcttcatacatttttataacactttgacattccacatacaaaccaaacctctctc |
175 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32107304 |
caacatcttcatatatttttataacactttgacattccacatacaaaccaaacctctctc |
32107245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University