View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_487 (Length: 205)
Name: NF9985A_low_487
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_487 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 3021220 - 3021388
Alignment:
| Q |
20 |
aatatcgttaacaaaa-taataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgacgttgctgcacttgctctta |
118 |
Q |
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| T |
3021220 |
aatatcgttaacaaaaataataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcacttactctta |
3021319 |
T |
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| Q |
119 |
aagggaaatcagcctgtcttaattttgctgactctgcatggcggttgaggttgccggagtcgaatgatg |
187 |
Q |
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| T |
3021320 |
aaggaaaatcagcttgtcttaattttgctgactctgcatggcggttgaggttgccggagtcgaatgatg |
3021388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 20 - 187
Target Start/End: Original strand, 3038089 - 3038257
Alignment:
| Q |
20 |
aatatcgttaacaaaa-taataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgacgttgctgcacttgctctta |
118 |
Q |
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| T |
3038089 |
aatatcgttaacaaaaataataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcacttactctta |
3038188 |
T |
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| Q |
119 |
aagggaaatcagcctgtcttaattttgctgactctgcatggcggttgaggttgccggagtcgaatgatg |
187 |
Q |
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| T |
3038189 |
aaggaaaatcagcttgtcttaattttgctgactctgcatggcggttgaggttgccggagtcgaatgatg |
3038257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 32 - 187
Target Start/End: Original strand, 3030447 - 3030602
Alignment:
| Q |
32 |
aaaataataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgacgttgctgcacttgctcttaaagggaaatcagc |
131 |
Q |
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| T |
3030447 |
aaaacaataagtcaaggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgatgttgctgcacttactcttaaaggaaaatcagc |
3030546 |
T |
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| Q |
132 |
ctgtcttaattttgctgactctgcatggcggttgaggttgccggagtcgaatgatg |
187 |
Q |
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| T |
3030547 |
ttgtcttaattttgctgactctgcatggcggttgacgttgccggagtcaaatgatg |
3030602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 46 - 164
Target Start/End: Complemental strand, 42553805 - 42553687
Alignment:
| Q |
46 |
aggatttggcttggaacatatccaactcctgaaatggctgcacgtgcacatgacgttgctgcacttgctcttaaagggaaatcagcctgtcttaattttg |
145 |
Q |
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| T |
42553805 |
aggatttggcttggaacatatccaacacctgagatggcagcacgtgcacacgacgttgccgcactggcacttcgcggtaaatcagcttgtcttaattttg |
42553706 |
T |
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| Q |
146 |
ctgactctgcatggcggtt |
164 |
Q |
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|||||||||| |||||||| |
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| T |
42553705 |
ctgactctgcgtggcggtt |
42553687 |
T |
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