View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9985A_low_488 (Length: 205)

Name: NF9985A_low_488
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9985A_low_488
NF9985A_low_488
[»] chr1 (4 HSPs)
chr1 (19-205)||(18438563-18438746)
chr1 (19-205)||(18449421-18449604)
chr1 (19-205)||(18454514-18454697)
chr1 (56-107)||(42080703-42080754)
[»] chr2 (6 HSPs)
chr2 (19-205)||(31320217-31320414)
chr2 (46-200)||(9446963-9447128)
chr2 (49-107)||(21949909-21949967)
chr2 (59-107)||(14555896-14555944)
chr2 (47-107)||(13698129-13698189)
chr2 (165-205)||(38346617-38346657)
[»] chr5 (3 HSPs)
chr5 (39-202)||(31610025-31610199)
chr5 (53-108)||(11888191-11888246)
chr5 (56-107)||(33417438-33417489)
[»] chr7 (4 HSPs)
chr7 (59-107)||(8425057-8425105)
chr7 (47-201)||(30559269-30559434)
chr7 (56-107)||(49094557-49094608)
chr7 (56-107)||(38836146-38836197)
[»] chr6 (1 HSPs)
chr6 (56-108)||(6982841-6982893)
[»] chr4 (3 HSPs)
chr4 (56-107)||(2048991-2049042)
chr4 (56-107)||(39735820-39735871)
chr4 (58-107)||(3958957-3959006)
[»] scaffold0141 (1 HSPs)
scaffold0141 (59-107)||(16545-16593)
[»] chr8 (1 HSPs)
chr8 (61-106)||(19168189-19168234)
[»] chr3 (1 HSPs)
chr3 (47-107)||(3830691-3830751)


Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 18438563 - 18438746
Alignment:
Q  19 gaagagtaaaggaggcagtcataagaagcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatctgactgtcttg 118  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18438563 gaagagtaaaggaggcagtcataagaatcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatctgactgtcttg 18438662  T
Q  119 ttgaaagttccatatcttgcagttgttgttcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagtggga 205  Q
    |||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18438663 ttgaaagttccatatcttgca---gttgttcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagtggga 18438746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 18449421 - 18449604
Alignment:
Q  19 gaagagtaaaggaggcagtcataagaagcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatctgactgtcttg 118  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18449421 gaagagtaaaggaggcagtcataagaatcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatctgactgtcttg 18449520  T
Q  119 ttgaaagttccatatcttgcagttgttgttcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagtggga 205  Q
    |||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18449521 ttgaaagttccatatcttgca---gttgttcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagtggga 18449604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 18454514 - 18454697
Alignment:
Q  19 gaagagtaaaggaggcagtcataagaagcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatctgactgtcttg 118  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18454514 gaagagtaaaggaggcagtcataagaatcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatctgactgtcttg 18454613  T
Q  119 ttgaaagttccatatcttgcagttgttgttcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagtggga 205  Q
    |||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18454614 ttgaaagttccatatcttgca---gttgttcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagtggga 18454697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 42080754 - 42080703
Alignment:
Q  56 agtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 107  Q
    |||||||||||||| ||||  ||||||||||||||||| |||||||||||||    
T  42080754 agtagtgagcacatccaaactcgttccaaaaagggtgtaatcaaaagcaatc 42080703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 3e-59; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 31320217 - 31320414
Alignment:
Q  19 gaagagtaaaggaggcagtcataagaagcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc----------- 107  Q
    |||||||||| ||||||| ||| |||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||               
T  31320217 gaagagtaaaagaggcagacatcagaagcaatacactagtagtgagctcatacaaacgcgttccaaaaagggtgtgatcaaaagcaatcccaaatatatg 31320316  T
Q  108 tgactgtcttgttgaaagttccatatcttgcagttgttgttcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagtggga 205  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||||||||||||||||||||||||    
T  31320317 tgattgtcttgttgaaagttccatatcttgcagttgttgttcttatttgggttcatcttctgctattctagatggttgctgaatctatcttagtggga 31320414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 46 - 200
Target Start/End: Original strand, 9446963 - 9447128
Alignment:
Q  46 gcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc-----------tgactgtcttgttgaaagttccatatc 134  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||    
T  9446963 gcaaaacactagtagtgagcacacacaaacgcgttccaaaaagggtgtgatcaaaagcaatcccaaatatatgtgactgtcttgttgaaagttccatatc 9447062  T
Q  135 ttgcagttgttgttcttatttgagttcaacttctgttattttagatggttgctgaatctatcttag 200  Q
    ||||||||||||||||||| || ||||||||||||||||||| |||||| ||||||||||||||||    
T  9447063 ttgcagttgttgttcttatgtgggttcaacttctgttattttggatggtggctgaatctatcttag 9447128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 21949967 - 21949909
Alignment:
Q  49 aaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 107  Q
    ||||||||||||||||||||||||||  ||||| ||||||||||| |||||||||||||    
T  21949967 aaacactagtagtgagcacatacaaactcgttctaaaaagggtgtaatcaaaagcaatc 21949909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 14555896 - 14555944
Alignment:
Q  59 agtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 107  Q
    ||||| || |||||||  |||||||||||||||||||||||||||||||    
T  14555896 agtgatcatatacaaactcgttccaaaaagggtgtgatcaaaagcaatc 14555944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 107
Target Start/End: Original strand, 13698129 - 13698189
Alignment:
Q  47 caaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 107  Q
    |||| ||| |||||||||||||| ||||   ||||||  ||||||||||||||||||||||    
T  13698129 caaagcacaagtagtgagcacattcaaactggttccatgaagggtgtgatcaaaagcaatc 13698189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 38346657 - 38346617
Alignment:
Q  165 ttctgttattttagatggttgctgaatctatcttagtggga 205  Q
    |||||||||||| | ||||||||||||||||||| ||||||    
T  38346657 ttctgttattttggttggttgctgaatctatcttggtggga 38346617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 5e-55; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 39 - 202
Target Start/End: Original strand, 31610025 - 31610199
Alignment:
Q  39 ataagaagcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatct-----------gactgtcttgttgaaagtt 127  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||            |||||||||||||||||||    
T  31610025 ataagaagcaaaacactagtagtgagcacatacaaacgcgttctaaaaagggtgtgatcaaaagcaatcccaaatatatgcgactgtcttgttgaaagtt 31610124  T
Q  128 ccatatcttgcagttgttgttcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagtg 202  Q
    |||||| ||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  31610125 ccatattttgtagttgttgttcttatttgggttcaacttctgatattttagatggttgctgaatctatcttagtg 31610199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 11888246 - 11888191
Alignment:
Q  53 actagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatct 108  Q
    |||||||||||||| |||||||  |||||||| |||||||||||||||||||||||    
T  11888246 actagtagtgagcatatacaaattcgttccaagaagggtgtgatcaaaagcaatct 11888191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 33417438 - 33417489
Alignment:
Q  56 agtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 107  Q
    |||||||||||||||||||  ||||| ||||||||||| |||||||| ||||    
T  33417438 agtagtgagcacatacaaattcgttctaaaaagggtgtaatcaaaagtaatc 33417489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 8425057 - 8425105
Alignment:
Q  59 agtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 107  Q
    ||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  8425057 agtgagcacatacaaactcgttccaagaagggtgtgatcaaaagcaatc 8425105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 201
Target Start/End: Complemental strand, 30559434 - 30559269
Alignment:
Q  47 caaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc-----------tgactgtcttgttgaaagttccatatct 135  Q
    |||| ||| ||| ||||||||||| |||   |||||||||||||||| |||||||||||||           |||| ||| |||||| |||||  |||      
T  30559434 caaagcacaagtcgtgagcacatagaaacttgttccaaaaagggtgttatcaaaagcaatcccaaagatttgtgacggtcatgttgacagttctgtattc 30559335  T
Q  136 tgcagttgttgttcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagt 201  Q
    |||||||| ||||| ||||||  |||  ||||||||||||| | ||||||||||||||||||||||    
T  30559334 tgcagttgctgttcatatttggtttcggcttctgttattttgggtggttgctgaatctatcttagt 30559269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 107
Target Start/End: Complemental strand, 49094608 - 49094557
Alignment:
Q  56 agtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 107  Q
    |||||||||||||||||||  ||||||||||| ||||| |||||||||||||    
T  49094608 agtagtgagcacatacaaacacgttccaaaaaaggtgttatcaaaagcaatc 49094557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 38836146 - 38836197
Alignment:
Q  56 agtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 107  Q
    ||||||||||| |||||||  ||||||||||| ||||| |||||||||||||    
T  38836146 agtagtgagcatatacaaactcgttccaaaaatggtgttatcaaaagcaatc 38836197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 6982841 - 6982893
Alignment:
Q  56 agtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatct 108  Q
    |||||||||||||||||||  ||||| ||||||||||| ||||||||||||||    
T  6982841 agtagtgagcacatacaaactcgttcaaaaaagggtgtaatcaaaagcaatct 6982893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 2048991 - 2049042
Alignment:
Q  56 agtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 107  Q
    ||||||||||| |||||||  ||||||||||||||||| |||||||||||||    
T  2048991 agtagtgagcatatacaaactcgttccaaaaagggtgttatcaaaagcaatc 2049042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 39735820 - 39735871
Alignment:
Q  56 agtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 107  Q
    |||||||||||||||||||  |||||||| |||||||| |||||||||||||    
T  39735820 agtagtgagcacatacaaactcgttccaagaagggtgtaatcaaaagcaatc 39735871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 3959006 - 3958957
Alignment:
Q  58 tagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 107  Q
    |||||||||||||||||  ||||| ||||||||||| |||||||||||||    
T  3959006 tagtgagcacatacaaactcgttctaaaaagggtgtcatcaaaagcaatc 3958957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 16593 - 16545
Alignment:
Q  59 agtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 107  Q
    |||||||||||| |||  |||||||| ||||||||||||||||||||||    
T  16593 agtgagcacatataaactcgttccaagaagggtgtgatcaaaagcaatc 16545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 61 - 106
Target Start/End: Original strand, 19168189 - 19168234
Alignment:
Q  61 tgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaat 106  Q
    ||||||||||||||  ||||| ||||||||||| ||||||||||||    
T  19168189 tgagcacatacaaactcgttctaaaaagggtgtcatcaaaagcaat 19168234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 107
Target Start/End: Complemental strand, 3830751 - 3830691
Alignment:
Q  47 caaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 107  Q
    |||| ||| |||||||||||||| ||||  |||||||  ||| ||||||||||||||||||    
T  3830751 caaagcacaagtagtgagcacattcaaactcgttccatgaagagtgtgatcaaaagcaatc 3830691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University