View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_495 (Length: 203)
Name: NF9985A_low_495
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_495 |
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| [»] scaffold0166 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 112; Significance: 8e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 50 - 185
Target Start/End: Complemental strand, 11841872 - 11841737
Alignment:
| Q |
50 |
atcaagatcatgatgaaaattcaaatgcaatcaatatagatttactattagagattgcttgaacagtactatgattctatcttttaattagttgaacgat |
149 |
Q |
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| T |
11841872 |
atcaagatcatgataaaaattcaaatgcaatcaatatagatttactattggagattgcttgaacagtacaatgattctatcttttaattagtctaacgat |
11841773 |
T |
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| Q |
150 |
ggttttttcattcgccgacaaaggttagacctttct |
185 |
Q |
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| T |
11841772 |
ggttttttcattcgccgacaaaggttcgacctttct |
11841737 |
T |
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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 19345646 - 19345581
Alignment:
| Q |
120 |
atgattctatcttttaattagttgaacgatggttttttcattcgccgacaaaggttagacctttct |
185 |
Q |
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| T |
19345646 |
atgattatatcctctaattagccgaacgatggttttttcattcgccgacaaaggttcgacctttct |
19345581 |
T |
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Target: scaffold0166 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0166
Description:
Target: scaffold0166; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 7059 - 6975
Alignment:
| Q |
53 |
aagatcatgatgaaaattcaaatgcaatcaatatagatttactattagagattgcttgaacagtactatgattctatcttttaat |
137 |
Q |
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| T |
7059 |
aagatgatgataaaaattcaaattctatcaatataaatttactattagaggttattcgaacactacagtaattctatcttttaat |
6975 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 25276546 - 25276486
Alignment:
| Q |
124 |
ttctatcttttaattagttgaacgatggttttttcattcgccgacaaaggttagacctttc |
184 |
Q |
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| T |
25276546 |
ttctatattttaattagtcgaacgatggttttttcattcctcgacaaatgttcgtcctttc |
25276486 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 24764562 - 24764478
Alignment:
| Q |
53 |
aagatcatgatgaaaattcaaatgcaatcaatatagatttactattagagattgcttgaacagtactatgattctatcttttaat |
137 |
Q |
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| T |
24764562 |
aagatgatgataaaaattcaaattctatcaatataaatttactattagaggttattcgaacactacagtaattctatcttttaat |
24764478 |
T |
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