View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_497 (Length: 203)
Name: NF9985A_low_497
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_497 |
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| [»] scaffold0132 (2 HSPs) |
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Alignment Details
Target: scaffold0132 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: scaffold0132
Description:
Target: scaffold0132; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 55 - 189
Target Start/End: Original strand, 1793 - 1930
Alignment:
| Q |
55 |
gaacacctaaaaccaaaccaacacccgacgaacccgatcaacatgaagcaacggaagaac---ttaagaatctgcacaaaccacactaaagaaccacaaa |
151 |
Q |
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| T |
1793 |
gaacacctaaaatcaaaccaacacccgacttacccgatcaacatgaagcaacggaagaacgtcttaagaatctgcacaaaccacactaaagcaccacaaa |
1892 |
T |
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| Q |
152 |
aaatcaaaacaatatccgcgacataacaaccaacacca |
189 |
Q |
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| T |
1893 |
aaatcaaaacaatatccgcgacataacaaccaacacca |
1930 |
T |
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Target: scaffold0132; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 55 - 189
Target Start/End: Original strand, 9753 - 9890
Alignment:
| Q |
55 |
gaacacctaaaaccaaaccaacacccgacgaacccgatcaacatgaagcaacggaagaac---ttaagaatctgcacaaaccacactaaagaaccacaaa |
151 |
Q |
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|||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
9753 |
gaacacctaaaatcaaaccaacacccgacttacccgatcaacatgaagcaacggaagaacgtcttaagaatctgcacaaaccacactaaagcaccacaaa |
9852 |
T |
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| Q |
152 |
aaatcaaaacaatatccgcgacataacaaccaacacca |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
9853 |
aaatcaaaacaatatccgcgacataacaaccaacacca |
9890 |
T |
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