View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_51 (Length: 393)
Name: NF9985A_low_51
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_51 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 7 - 393
Target Start/End: Complemental strand, 45945928 - 45945541
Alignment:
| Q |
7 |
gcaatcaccaccaccgccgtcaatgctaccgttgagaaaccaaaactcgacggtggtaaaggccgtgcctttgtgactttccttgctggaaacgctgatt |
106 |
Q |
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| T |
45945928 |
gcaatcaccaccaccgccgtgaatgctaccgttgagaaaccaaaactcgacggtggtaaaggccgtgcctttgtgactttccttgctggaaacgctgatt |
45945829 |
T |
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| Q |
107 |
acatcaaaggtgttgttggtttagccaaaggattgagaaaa-ccaaaaccatgtaccctttggttgttgctatcttacctgatgttcccgaagaacatcg |
205 |
Q |
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| T |
45945828 |
acatcaaaggtgttgttggtttagccaaaggattgagaaaaaccaaaaccatgtaccctttggttgttgctatcttacctgatgttcctgaagaacatcg |
45945729 |
T |
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| Q |
206 |
taagatccttgtttcacaaggttgcattgttaaggagattgatcctgtgtaccctccagccaaccaaaccgaatttgctatggcatattatgtcatcaat |
305 |
Q |
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| T |
45945728 |
taagatccttgtttcacaaggttgcattgttaaggagattgctcctgtgtaccctccagccaaccaaaccgaatttgctatggcatattatgtcatcaat |
45945629 |
T |
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| Q |
306 |
tactccaaactacgtatctttgaggtacatgtctttgagtaaaatgtcttttttattatatctttgcttttgcatgtgttacacgtag |
393 |
Q |
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| T |
45945628 |
tactccaaactacgtatcttcgaggtacatgtctttgagtaaaatgtcttttttattatatctttgcttttgcatgtgttacacgtag |
45945541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 73 - 322
Target Start/End: Original strand, 55221333 - 55221583
Alignment:
| Q |
73 |
gcctttgtgactttccttgctggaaacgctgattacatcaaaggtgttgttggtttagccaaaggattgagaaaac-caaaaccatgtaccctttggttg |
171 |
Q |
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| T |
55221333 |
gcctttgtgaccttccttgttggaaatggtgactatgtcaaaggtgtggttggtttagccaaaggtcttcgtaaggtcaaaaccatgtaccctctagtgg |
55221432 |
T |
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| Q |
172 |
ttgctatcttacctgatgttcccgaagaacatcgtaagatccttgtttcacaaggttgcattgttaaggagattgatcctgtgtaccctccagccaacca |
271 |
Q |
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| T |
55221433 |
ttgcagtgttgcctgatgttcctgagcaacataggaatattctcatcgctcaaggttgcattgttagagagattgcacctgtttaccctcctaagaatca |
55221532 |
T |
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| Q |
272 |
aaccgaatttgctatggcatattatgtcatcaattactccaaactacgtat |
322 |
Q |
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| T |
55221533 |
aacccaatttgctatggcttattatgtcatcaactactccaaactacgtat |
55221583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 70 - 322
Target Start/End: Original strand, 37697467 - 37697720
Alignment:
| Q |
70 |
cgtgcctttgtgactttccttgctggaaacgctgattacatcaaaggtgttgttggtttagccaaaggattgagaaaac-caaaaccatgtaccctttgg |
168 |
Q |
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| T |
37697467 |
cgtgccttcgtcaccttccttgctggaaatggtgattatgtgaagggtgttgttggtttagctaaaggtcttcgtaaagtcaaaaccatgtatcctttag |
37697566 |
T |
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| Q |
169 |
ttgttgctatcttacctgatgttcccgaagaacatcgtaagatccttgtttcacaaggttgcattgttaaggagattgatcctgtgtaccctccagccaa |
268 |
Q |
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| T |
37697567 |
tggttgcagtgttacctgatgttcctcaagaacataggaatattctcacctctcaaggttgcattgttagagaaattgaacctgtttatcctccagaaaa |
37697666 |
T |
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| Q |
269 |
ccaaaccgaatttgctatggcatattatgtcatcaattactccaaactacgtat |
322 |
Q |
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| T |
37697667 |
ccaaactcagtttgccatggcttattatgtcatcaactactccaaattacgtat |
37697720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 70 - 322
Target Start/End: Complemental strand, 37688052 - 37687798
Alignment:
| Q |
70 |
cgtgcctttgtgactttccttgctggaaacgctgattacatcaaaggtgttgttggtttagccaaaggattgagaaaac-caaaaccatgtaccctttgg |
168 |
Q |
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| T |
37688052 |
cgtgccttcgtcaccttccttgctggaaatggtgattatgtgaagggtgttgttggtttagctaaaggtcttcgtaaagtcaaaaccatgtatcctttag |
37687953 |
T |
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| Q |
169 |
ttgttgctatcttacctgatgttcccgaagaacatcgtaagatccttgtttcacaaggttgcattgttaaggagattgatcctgtgtaccctcca-gcca |
267 |
Q |
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| T |
37687952 |
tggttgcagtgttacctgatgttcctcaagaacataggaatattctcacctctcaaggttgcattgttagagaaattgaacctgtttatcctccaagaaa |
37687853 |
T |
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| Q |
268 |
accaaaccgaatttgctatggcatattatgtcatcaattactccaaactacgtat |
322 |
Q |
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| T |
37687852 |
accaaactcagtttgccatggcttattatgtcatcaactactccaaattacgtat |
37687798 |
T |
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