View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_68 (Length: 372)
Name: NF9985A_low_68
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_68 |
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Alignment Details
Target: chr7 (Bit Score: 113; Significance: 4e-57; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 250 - 366
Target Start/End: Complemental strand, 34254759 - 34254643
Alignment:
| Q |
250 |
acaacgacgttaaagctaatcttcgcagattcacttcccgctttccttctcctatcgccaaggataatcgtggttggattcttgatcctattgctctcgc |
349 |
Q |
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| T |
34254759 |
acaacgacgttaaagctaatcttcgcagattcacttcccgctttccttctcctatcgccaaggataatcgtggttggattcttgatcctattgctctcgc |
34254660 |
T |
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| Q |
350 |
actttcttccaccattt |
366 |
Q |
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| T |
34254659 |
actttcttccatcattt |
34254643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 34254916 - 34254860
Alignment:
| Q |
93 |
acttccgccatgttccaacggatccgcccctccctcgtcacttcattccttcaaaga |
149 |
Q |
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| T |
34254916 |
acttccgccatgttccaacggatccgcccctccctcgtcacttcattccttcaaaga |
34254860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 34254993 - 34254941
Alignment:
| Q |
19 |
catcaacaaccagcgcaacaccgcgaagaccaatccaaatcagcataccacca |
71 |
Q |
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| T |
34254993 |
catcaacaaccagcgcaacaccgcgaagaccaatccaaatcagcataccacca |
34254941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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