View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_79 (Length: 356)
Name: NF9985A_low_79
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_79 |
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Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 6 - 350
Target Start/End: Original strand, 41833255 - 41833599
Alignment:
| Q |
6 |
agaatcagagactcatcaaaggaatttgaaaaaccaacaaaaaacgacaaattgcacaaccatacattgatatgatattattttttgtgtgtacgccata |
105 |
Q |
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| T |
41833255 |
agaatcaaacactcatcaaaggaattaaaaaaaccaacaaaaaacgacaaatagcacaaccatacattgatatgatattattttttgtgtgtacgccata |
41833354 |
T |
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| Q |
106 |
tgcacatttaagcacattggaaatcatgtgggactttccttgagcaaacattgagaagcaagcttagtgaaattggaaggttgagattaatgcccaaaat |
205 |
Q |
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| T |
41833355 |
tgcacatttaagcacattgaaaatcatgtgggactttccttgagcaaacattgagaagcaagcttagtgaaattggaaggttgagattaatgcccaaaat |
41833454 |
T |
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| Q |
206 |
gttagctttaagggcagtgcaaaggcatgctgcagcctcaagatcaacaaggccatttaggagtgagcaacaaggggttactggtggtttacccaaagtt |
305 |
Q |
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| T |
41833455 |
gttagctttaagggcagtgcaaaggcatgctgcagcctcgagatcaacaaggccatttaggagtgagcaacaaggggttactggtggtttacccaaagtt |
41833554 |
T |
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| Q |
306 |
aaattcaacaacccacttaggacattggcacatacaccaagtttg |
350 |
Q |
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| T |
41833555 |
aaattcaacaacccacttaggacattggcacatacaccaagtttg |
41833599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 120 - 350
Target Start/End: Original strand, 41846962 - 41847192
Alignment:
| Q |
120 |
cattggaaatcatgtgggactttccttgagcaaacattgagaagcaagcttagtgaaattggaaggttgagattaatgcccaaaatgttagctttaaggg |
219 |
Q |
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| T |
41846962 |
cattggaaatcacgtggtgcttgctttgagcaaacattgagaagcaagctaagtgagataggaaggttgagattgatccccaaaatgttagctttaaggg |
41847061 |
T |
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| Q |
220 |
cagtgcaaaggcatgctgcagcctcaagatcaacaaggccatttaggagtgagcaacaaggggttactggtggtttacccaaagttaaattcaacaaccc |
319 |
Q |
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| T |
41847062 |
cagtgcaaagacacacagcagcttcaagatcaacaaggccatttaggagggtgcagcatggtgtcactggtggctgacccagagtaacattcaacaatcc |
41847161 |
T |
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| Q |
320 |
acttaggacattggcacatacaccaagtttg |
350 |
Q |
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| T |
41847162 |
atttagtacattggcacatacacctagtttg |
41847192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 207 - 281
Target Start/End: Complemental strand, 9738691 - 9738617
Alignment:
| Q |
207 |
ttagctttaagggcagtgcaaaggcatgctgcagcctcaagatcaacaaggccatttaggagtgagcaacaaggg |
281 |
Q |
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|||||||||||||||||||||||||| || ||||| ||||||||| |||| || | | |||||||||||||||| |
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| T |
9738691 |
ttagctttaagggcagtgcaaaggcaagcagcagcttcaagatcagcaagaccttgaatgagtgagcaacaaggg |
9738617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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