View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_88 (Length: 347)
Name: NF9985A_low_88
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_88 |
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Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 5 - 341
Target Start/End: Complemental strand, 3602540 - 3602196
Alignment:
| Q |
5 |
gattattctaaggagaattatgaagaacttactgaagagtttgatgtggtgtatgatgcagtaggtaagatatttgtactaaatttgaacccttattaat |
104 |
Q |
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| T |
3602540 |
gattatactaaggagaattatgaagaacttactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtagtaaatttgaacccttattaat |
3602441 |
T |
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| Q |
105 |
a---tattgtattatgtgtaagttttcattgtaagaaa-caatatagttaagaacctatttaatattttttat----tccaaaaataggtgatagtgaga |
196 |
Q |
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| T |
3602440 |
aatatattgtattatgtgtaagttttcattgtaagaaaacaatatagttaagaacctatttaatattttttatatattcctaaaataggtgatagtgaga |
3602341 |
T |
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| Q |
197 |
gggcagtgaaggctgccaatgaaggaggaaaagttgtgacaatactaccacctggaactccaccagctatccctttcttactcacttcagatggagctgt |
296 |
Q |
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| T |
3602340 |
gggcagtgaaggctgccaatgaaggaggaaaagttgtgacaatactaccacctggaactccaccagctatccctttcttactcacttcagatggagctgt |
3602241 |
T |
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| Q |
297 |
gttagagaaattgcaaccttatttggaaaatggcaaagtgaaacc |
341 |
Q |
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| T |
3602240 |
attagagaaattgcaaccttatttggaaaatggcaaagtgaaacc |
3602196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 5 - 337
Target Start/End: Complemental strand, 3598380 - 3598043
Alignment:
| Q |
5 |
gattattctaaggagaattatgaagaacttactgaagagtttgatgtggtgtatgatgcagtaggtaagatatttgtactaaatttgaacccttattaat |
104 |
Q |
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| T |
3598380 |
gattatacaaaggagaattatgaagaaattactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtattaaatttgaatttttattaat |
3598281 |
T |
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| Q |
105 |
atattgtattatgtgtaagttttcattgtaagaaa-caatatagttaagaacctatttaatattttttat----tccaaaaataggtgatagtgagaggg |
199 |
Q |
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| T |
3598280 |
atgttgtataatgtgtaagttttcattgtaagaaaacaatatagttaagaacctatttaatattttttatatattccaaaaataggtgatagtgagaggg |
3598181 |
T |
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| Q |
200 |
cagtgaaggctgccaatgaaggaggaaaagttgtgacaatactaccacctggaactccaccagctatccctttcttactcacttcagatggagctgtgtt |
299 |
Q |
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| T |
3598180 |
cagtgaaggctgccaatgaaggaggaaaagttgtgacaatactaccacctggaactccaccagctatccctttcttactcacttcagatggagcagtgtt |
3598081 |
T |
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| Q |
300 |
agagaaattgcaaccttatttggaaaatggcaaagtga |
337 |
Q |
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| T |
3598080 |
agagaaattgcaaccttatttggaaaatggcagagtga |
3598043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 5 - 341
Target Start/End: Complemental strand, 3595155 - 3594814
Alignment:
| Q |
5 |
gattattctaaggagaattatgaagaacttactgaagagtttgatgtggtgtatgatgcagtaggtaagatatttgtactaaatttgaacccttattaat |
104 |
Q |
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|||||| | |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
3595155 |
gattatacaaaggagaattatgaagaaattactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtattaaatttgaatttttattaat |
3595056 |
T |
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| Q |
105 |
atattgtattatgtgtaagttttcattgta-agaaacaatatagttaagaacctatttaatattttttat----tccaaaaataggtgatagtgagaggg |
199 |
Q |
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| T |
3595055 |
atgttgtataatgtgtaagttttcattgtataaaaacaatatagttaaaaacctattaaatattttttatatattccaaaaataggtgatagtgagaggg |
3594956 |
T |
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| Q |
200 |
cagtgaaggctgccaatgaaggaggaaaagttgtgacaatactaccacctggaactccaccagctatccctttcttactcacttcagatggagctgtgtt |
299 |
Q |
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| T |
3594955 |
cactgaaggctgtaaatgaaggaggaaaatttttgacaatactaccacctggaactccaccagctatcccttttgcactcacttcagatggagctgtgtt |
3594856 |
T |
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| Q |
300 |
agagaaattgcaaccttatttggaaaatggcaaagtgaaacc |
341 |
Q |
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| T |
3594855 |
agagaaattgaaaccttacttggaaaatggcaaagtgaaacc |
3594814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 261 - 341
Target Start/End: Original strand, 3583585 - 3583665
Alignment:
| Q |
261 |
agctatccctttcttactcacttcagatggagctgtgttagagaaattgcaaccttatttggaaaatggcaaagtgaaacc |
341 |
Q |
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| T |
3583585 |
agctatcactttcttactcacttcagatggagcagtgttagagaaattgaaaccttacttggaaaatggcaaactgaaacc |
3583665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 12877009 - 12877079
Alignment:
| Q |
5 |
gattattctaaggagaattatgaagaacttactgaagagtttgatgtggtgtatgatgcagtaggtaagat |
75 |
Q |
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|||||| | |||||||||| |||||| || |||| ||||||||||||||| |||| ||||||||||||| |
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| T |
12877009 |
gattatacaaaggagaattttgaagacctgcctgagaagtttgatgtggtgtttgatacagtaggtaagat |
12877079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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