View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9985A_low_89 (Length: 346)
Name: NF9985A_low_89
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_89 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 9 - 332
Target Start/End: Complemental strand, 35343460 - 35343137
Alignment:
| Q |
9 |
ctatgtgaaaagtgtatgttaaaaagaagaaaatggaattagttatatgatatgctaagatagttgtgtgagttgagttaggattagagagttttatgtt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
35343460 |
ctatgtgaaaagtgtatgttaaaaagaagaaaatggaattagttatatgatatgctaagatagttgtgtgagttgagttaggattagagagttttgtgtt |
35343361 |
T |
|
| Q |
109 |
atatataactagaagagaacttgttgagtaattccaccacaattaaaccacacaagaagtgtgtatgtttacttaaggtgtgagcattgctacgtgcctg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35343360 |
atatataactagaagagaacttgttgagttattccaccacaattaaaccacacaagaagtgtgtatgtttacttaaggtgtgagctttgctacgtgcctg |
35343261 |
T |
|
| Q |
209 |
catgtgtaatggcatattgggcagccacattggcaattgtctttacaattcagcttaaatgttggaaatagcagtaaagaatcaagaatattgacaaaat |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
35343260 |
catgtgtaatggcatattgggcagccacattggcaattgtctttacaattcagcttaaatgttggaaatagcagcaaagaatcaagaatattgacaaaat |
35343161 |
T |
|
| Q |
309 |
agaatgtttgagtggatgcatata |
332 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
35343160 |
agaatgtttgagtggatgcatata |
35343137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 108 - 332
Target Start/End: Original strand, 35368411 - 35368637
Alignment:
| Q |
108 |
tatatataactagaagagaacttgttg-agtaattccaccacaattaaaccacacaagaagtgtgtatgtttacttaa-ggtgtgagcattgctacgtgc |
205 |
Q |
| |
|
||||||||||||||||| || |||||| ||| ||| | ||||| |||||||||||||||||||||||||| ||||| || ||||||| ||||||||| |
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|
| T |
35368411 |
tatatataactagaagataagttgttggagttgttctaacacaagcaaaccacacaagaagtgtgtatgtttgcttaaaggaatgagcatggctacgtgc |
35368510 |
T |
|
| Q |
206 |
ctgcatgtgtaatggcatattgggcagccacattggcaattgtctttacaattcagcttaaatgttggaaatagcagtaaagaatcaagaatattgacaa |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
35368511 |
ctgcatgtgtaatggcatattgggcagccacattggcaattgtctttacaattcagcttaaatgttggaaatagcagcaaagaatcaagaatattgacaa |
35368610 |
T |
|
| Q |
306 |
aatagaatgtttgagtggatgcatata |
332 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
35368611 |
aatagaatgtttgagtggatgcatata |
35368637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 16 - 332
Target Start/End: Complemental strand, 35348143 - 35347809
Alignment:
| Q |
16 |
aaaagtgtatgttaaaaagaagaaaatggaattagttatatgatatgctaagatagttgtgtgagttgag-----------ttaggattagagagttt-t |
103 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| | |
|
|
| T |
35348143 |
aaaaatgtatgttataaagaagaaaatggaattagttatatgatatgctaaggtagttgtgtgagttgagctgtgtttgagttaggattggagagtttgt |
35348044 |
T |
|
| Q |
104 |
atgttatatataactagaagagaacttgttgagtaattccaccacaattaaaccacacaagaagtgtgtatgtttacttaaggtgtgagcattgctacgt |
203 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||| ||| | ||||| ||||||||||||||||||||| |||| |||||||| ||||||| ||||||| |
|
|
| T |
35348043 |
gtgttatatataacaagaagagaagttgttgagtagttctaacacaagcaaaccacacaagaagtgtgtaagtttgcttaaggtatgagcatggctacgt |
35347944 |
T |
|
| Q |
204 |
gcctgcatgtgta--atggcatattgggcagccacattggcaattgtctttacaattcagcttaaat----gt-tggaaatagcagtaaagaatcaagaa |
296 |
Q |
| |
|
||||||||||||| |||| | ||| |||||||||||||||||||||| ||||||||||| || || || |||||| || || ||||| ||||||| |
|
|
| T |
35347943 |
gcctgcatgtgtaatatggggtcttgtgcagccacattggcaattgtctctacaattcagcatatatacacgtatggaaa-agaagcaaagactcaagaa |
35347845 |
T |
|
| Q |
297 |
tattgacaaaatagaatgtttgagtggatgcatata |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
35347844 |
tattgacaaaatagaatgtttgagtggatgcatata |
35347809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 9 - 327
Target Start/End: Original strand, 35355823 - 35356157
Alignment:
| Q |
9 |
ctatgtgaaaagtgtatgtta-aaaagaagaaaatggaattagttatatgatatgc--taagatagttgtgtgagttgagtt-----------aggatta |
94 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||| |||||| |
|
|
| T |
35355823 |
ctatgtaaaaagtgtatgttggaaaagaagaaaatggaattagttatatgatatacactaaggtagttgtgtgagttgagttgtgtttgagttaggattg |
35355922 |
T |
|
| Q |
95 |
gagagttt-tatgttatatataactagaagagaacttgttg-agtaattccaccacaattaaaccacacaagaagtgtgtatgtttacttaaggtgtgag |
192 |
Q |
| |
|
|||||||| | ||||||||||||| | ||||| |||||| ||| ||| | ||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
35355923 |
gagagtttgtgtgttatatataacaaaaagagtg-ttgttggagttgttctaacacaagtaaaccacacaagaagtgtgtatgtttgcttaaggtgtgag |
35356021 |
T |
|
| Q |
193 |
cattgctacgtgcctgcatgtgtaatggcatattgggcagccacattggcaattgtctttaca-attcagcttaaatgttggaaatagcagtaaagaatc |
291 |
Q |
| |
|
||| || ||||||||||||||||| | || ||| ||||||||||||||||||||||||||| |||||||||| | |||||||||||||| ||||||| |
|
|
| T |
35356022 |
catacctcagtgcctgcatgtgtaatagaatcttgtgcagccacattggcaattgtctttacacattcagcttacacgttggaaatagcagctaagaatc |
35356121 |
T |
|
| Q |
292 |
aagaatattgacaaaatagaatgtttgagtggatgc |
327 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
35356122 |
aagaatattgacaaaatagaatgtttgagtggatgc |
35356157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 81 - 328
Target Start/End: Original strand, 35374536 - 35374784
Alignment:
| Q |
81 |
ttgagttaggattagagagttt-tatgttatatataactagaagagaacttgttg-agtaattccaccacaattaaaccacacaagaagtgtgtatgttt |
178 |
Q |
| |
|
||||||||||||| |||||||| | ||||||||||||| | ||||| |||||| ||| ||| | ||||| |||||||||||||||||||||||||| |
|
|
| T |
35374536 |
ttgagttaggattggagagtttgtgtgttatatataacaaaaagagttgttgttggagttgttctaacacaagcaaaccacacaagaagtgtgtatgttt |
35374635 |
T |
|
| Q |
179 |
acttaaggtgtgagcattgctacgtgcctgcatgtgtaatggcatattgggcagccacattggcaattgtctttacaattcagcttaaatgttggaaata |
278 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||| | || ||| |||||||||||||||||||||||||| ||||||| || | |||||||||| |
|
|
| T |
35374636 |
gcttaaggtgtgagcatacctcagtgcctgcatgtgtaatagaatcttgtgcagccacattggcaattgtctttac-attcagcatacacgttggaaata |
35374734 |
T |
|
| Q |
279 |
gcagtaaagaatcaagaatattgacaaaatagaatgtttgagtggatgca |
328 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35374735 |
gcagctaagaatcaagaatattgacaaaatagaatgtttgagtggatgca |
35374784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 106 - 332
Target Start/End: Original strand, 35335792 - 35336017
Alignment:
| Q |
106 |
gttatatataactagaagagaacttgttgagtaattccaccacaattaaaccacacaagaagtgtgtatgtttacttaaggtgtgagcattgctacgtgc |
205 |
Q |
| |
|
||||||||||||||||||| || ||||||| ||| | ||||| ||||||| || ||||||||| ||||| |||||||||||||||| ||| |||| |
|
|
| T |
35335792 |
gttatatataactagaagaaaagctgttgagctgttctagcacaagcaaaccacgcaggaagtgtgtgtgtttgcttaaggtgtgagcatggctcggtgc |
35335891 |
T |
|
| Q |
206 |
ctgcatgtgtaatggcatattgggcagccacattggcaattgtctttacaattcagcttaaatgttggaaatagcagtaaagaatcaagaatattgacaa |
305 |
Q |
| |
|
|||||||||||||||||| ||| | |||||||||||||||||||||||||||||| |||| | |||||||| || || |||||||||||||||||||||| |
|
|
| T |
35335892 |
ctgcatgtgtaatggcatcttgtgtagccacattggcaattgtctttacaattcaacttacacgttggaaa-agaagcaaagaatcaagaatattgacaa |
35335990 |
T |
|
| Q |
306 |
aatagaatgtttgagtggatgcatata |
332 |
Q |
| |
|
|||| |||||||||||||||||||||| |
|
|
| T |
35335991 |
aataaaatgtttgagtggatgcatata |
35336017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 145 - 332
Target Start/End: Original strand, 35364638 - 35364826
Alignment:
| Q |
145 |
ccacaattaaaccacacaagaagtgtgtatgtttacttaaggtgtgagcattgctacgtgcctgcatgtgtaatggcatattgggcagccacattggcaa |
244 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||||||||||||||| ||| | ||| |||||||||||||| || ||| ||||||||||||||| |
|
|
| T |
35364638 |
ccacaagtaaaccacacaagaagtgtgtatgtttgcttaaggtgtgagcatggctccttgcttgcatgtgtaatgggatcttgtgcagccacattggcat |
35364737 |
T |
|
| Q |
245 |
ttgtctttacaattcagcttaaatgttggaaatagcagtaaagaatcaagaatattgacaaaatagaa-tgtttgagtggatgcatata |
332 |
Q |
| |
|
|||||||||||||||||| || ||||||| || || || ||||||||||||||| || |||||| || | ||| |||||||||||||| |
|
|
| T |
35364738 |
ttgtctttacaattcagcgtacatgttgggaaaagaagaaaagaatcaagaataatgggaaaatataatttttttagtggatgcatata |
35364826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 146 - 332
Target Start/End: Original strand, 35346345 - 35346530
Alignment:
| Q |
146 |
cacaattaaaccacacaagaagtgtgtatgt--ttacttaaggtgtgagcattgctacgtgcctgcatgtgtaatggcatattgggcagccacattggca |
243 |
Q |
| |
|
||||| ||||||||||||||||||||| ||| || |||||||||||||||| ||| |||||||||||| ||||| || ||| ||||||||||||||| |
|
|
| T |
35346345 |
cacaagtaaaccacacaagaagtgtgtgtgtgtttgcttaaggtgtgagcatggctcgatgcctgcatgtgcaatgggatcttgtgcagccacattggca |
35346444 |
T |
|
| Q |
244 |
attgtctttacaattcagcttaaatgttggaaatagcagtaaagaatcaagaatattgacaaaatagaatgtttgagtggatgcatata |
332 |
Q |
| |
|
|||||||||||||||||||||| | |||||||| |||| | ||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
35346445 |
attgtctttacaattcagcttacacgttggaaaatgcagcatagaatcaagaata---accaaatagaatgtttgagtggatgcatata |
35346530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 164 - 332
Target Start/End: Original strand, 35351430 - 35351603
Alignment:
| Q |
164 |
gaagtgtgtatgtttacttaaggtgtgagcattgctacgtgcctgcatgtgtaatggcatattgggcagccacattggcaattgtctttacaattcagct |
263 |
Q |
| |
|
||||||||||| ||| || ||||||||||||| ||||||||| ||||||||||||| || ||| |||||||||||||||||||| |||| || ||||| |
|
|
| T |
35351430 |
gaagtgtgtatctttgctaaaggtgtgagcatggctacgtgctagcatgtgtaatggaatcttgtgcagccacattggcaattgtttttataagtcagca |
35351529 |
T |
|
| Q |
264 |
taaatgttggaaatagcag-----taaagaatcaagaatattgacaaaatagaatgtttgagtggatgcatata |
332 |
Q |
| |
|
| | ||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
35351530 |
tgcacgttggaagaagcagcaaattaaagaatcaagaatattgaaaaaatcgaatgtttgagtggatgcatata |
35351603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 145 - 316
Target Start/End: Original strand, 35371815 - 35371983
Alignment:
| Q |
145 |
ccacaattaaaccacacaagaagtgtgtatgtttacttaaggtgtgagcattgctacgtgcctgcatgtgtaatggcatattgggcagccacattggcaa |
244 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||||||||||||||| ||| | ||| | |||||||||||| || ||| ||||| |||||||| |
|
|
| T |
35371815 |
ccacaagtaaaccacacaagaagtgtgtatgtttgcttaaggtgtgagcatggctccttgcttccatgtgtaatgggatcttgtgcagcatcattggcat |
35371914 |
T |
|
| Q |
245 |
ttgtctttacaattcagcttaaatgttggaaatagcagtaaagaatcaagaatattgacaaaatagaatgtt |
316 |
Q |
| |
|
|| |||||||||||||||||| | |||| || |||| ||||||||||||| |||| |||||||||||| |
|
|
| T |
35371915 |
ttctctttacaattcagcttacacgttgataaaagcaacaaagaatcaagaa---tgactaaatagaatgtt |
35371983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 70 - 327
Target Start/End: Original strand, 35340911 - 35341188
Alignment:
| Q |
70 |
agttgtgtgagttgagttaggattagagagttt-tatgttatatataactagaagagaacttgttg-agtaattccacc-------acaattaaaccaca |
160 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||| | || |||||||||| |||||||||||||||| ||| ||| || |||| |||||||| |
|
|
| T |
35340911 |
agttgtgtgagttgagttagtattggagagtttgtgtgatatatataacaagaagagaacttgttggagttgttctccctcctccaacaagcaaaccaca |
35341010 |
T |
|
| Q |
161 |
caagaagtgtgtatgtttacttaaggtgtgagcattgctacgtgcctgcatgtgtaat-----ggcatattgggcagccacattggcaa--ttgtcttta |
253 |
Q |
| |
|
|| |||||||||| || ||| ||||||| |||| ||| ||| ||| |||||||| || || ||| |||||||||||||||| ||||||||| |
|
|
| T |
35341011 |
caggaagtgtgtaatattgcttcaggtgtgtgcatcgctcattgcttgcttgtgtaatataatgggatcttgtgcagccacattggcaaaattgtcttta |
35341110 |
T |
|
| Q |
254 |
caattcagcttaaatgttggaaatagcagtaaagaatcaagaat----attgacaaaatagaatgtttgagtggatgc |
327 |
Q |
| |
|
||||||||| || | ||||||| ||||| | ||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35341111 |
caattcagcatacacgttggaagaagcagcatagattcaagaattaatattgacaaaatagaatgtttgagtggatgc |
35341188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 35346222 - 35346289
Alignment:
| Q |
34 |
gaagaaaatggaattagttatatgatatgctaagatagttgtgtgagttgagttaggattagagagttt |
102 |
Q |
| |
|
|||||||||| |||||| ||||| |||||||| |||||||||||| |||||||||||| |||||||| |
|
|
| T |
35346222 |
gaagaaaatg-aattagctatattggatgctaagttagttgtgtgagctgagttaggattggagagttt |
35346289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 35364516 - 35364575
Alignment:
| Q |
30 |
aaaagaagaaaatggaa--ttagttatatgatatgctaagatagttgtgtgagttgagtt |
87 |
Q |
| |
|
|||||| |||||||||| || ||||||||| |||||||| ||||| ||||||||||||| |
|
|
| T |
35364516 |
aaaagatgaaaatggaaattttgttatatgagatgctaaggtagttatgtgagttgagtt |
35364575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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