View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_9 (Length: 510)
Name: NF9985A_low_9
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 148 - 473
Target Start/End: Original strand, 28518944 - 28519269
Alignment:
| Q |
148 |
acttagttatcatgaagccaaagagtccattgtatatagctacacaaagagcttcaatgcatttgctgcaaaactgtcagaagatgaagtcaataagtta |
247 |
Q |
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| T |
28518944 |
acttagttatcatgaagccaaagagtccattgtatatagctacacaaagagcttcaatgcatttgctgcaaaactgtcagaagatgaagtcaataagtta |
28519043 |
T |
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| Q |
248 |
tctggtgtgtataattttttctctagcttaaaatttgtagatattgnnnnnnnnnnnnnnnnnnnnnnngcatgtgtagccatggatgaagtacttttgg |
347 |
Q |
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| T |
28519044 |
tctggtgtgtataattttttctctagcttaaaatttgtagatattgtttttttcttcgaatatttttttgtatgtgtagccatggatgaagtacttttgg |
28519143 |
T |
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| Q |
348 |
tgtgtaaaaatcaattccgtaagctacacacaacaagatcatggaacttcattggtttacctctgactgctaagagaagattgaaattagaacgcgacat |
447 |
Q |
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| T |
28519144 |
tgtttaaaaatcaataccgtaagttacacacaacaagatcatggaacttcattggtttacctctgactgccaagagaagattgaaattagaacgcgacat |
28519243 |
T |
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| Q |
448 |
agttgttgctcttttggacacaggtt |
473 |
Q |
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| T |
28519244 |
agttgttgctcttttggacacaggtt |
28519269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 28518816 - 28518866
Alignment:
| Q |
18 |
atcttctgtgaagggaaggtaaccttattaattcaatcaagcatttcttta |
68 |
Q |
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| T |
28518816 |
atcttctgtgaagggaaggtaaccttattaattcaatcaagcatttcttta |
28518866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 160 - 250
Target Start/End: Complemental strand, 12728953 - 12728863
Alignment:
| Q |
160 |
tgaagccaaagagtccattgtatatagctacacaaagagcttcaatgcatttgctgcaaaactgtcagaagatgaagtcaataagttatct |
250 |
Q |
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| T |
12728953 |
tgaagccaaagagtccatagtatacagctacacaaagagctttaatgcatttgctgctaaactatccgaggatgaagccaacaagttatct |
12728863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 160 - 252
Target Start/End: Original strand, 34291144 - 34291236
Alignment:
| Q |
160 |
tgaagccaaagagtccattgtatatagctacacaaagagcttcaatgcatttgctgcaaaactgtcagaagatgaagtcaataagttatctgg |
252 |
Q |
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| T |
34291144 |
tgaagccaaagaatccatagtatacagctacacaaagagctttaatgcatttgctgctaaactgtctgaggatgaagcaaacaagttatctgg |
34291236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 425
Target Start/End: Complemental strand, 12728832 - 12728763
Alignment:
| Q |
356 |
aatcaattccgtaagctacacacaacaagatcatggaacttcattggtttacctctgactgctaagagaa |
425 |
Q |
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| T |
12728832 |
aatcaataccgcaagctacacacaacaagatcatgggactttattggattaccattgacagctaagagaa |
12728763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 368 - 425
Target Start/End: Original strand, 34291368 - 34291425
Alignment:
| Q |
368 |
aagctacacacaacaagatcatggaacttcattggtttacctctgactgctaagagaa |
425 |
Q |
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|||||||||||||||||||||||| | || ||||| |||||| |||| |||||||||| |
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| T |
34291368 |
aagctacacacaacaagatcatgggattttattggattacctttgacagctaagagaa |
34291425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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