View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9985A_low_92 (Length: 345)
Name: NF9985A_low_92
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_92 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 12 - 339
Target Start/End: Complemental strand, 29561548 - 29561221
Alignment:
| Q |
12 |
atgtagttaaggggacgaaatgtccaccggttccattggatacacagaaagagtttgagaagcgaatagtagtttgcagctcaaaggagaaaagtagtaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| || |
|
|
| T |
29561548 |
atgtagttaaggggacgaaatgtccaccggttccattggatacacagaaagagtttgagaagcgaatagtaatttgcagctcaaaggaaaaaagtagcaa |
29561449 |
T |
|
| Q |
112 |
tgttacagaaaacggaaaacacagtgaggttttaaggaatggagaaagnnnnnnncatgctgctagaggtggattactggttccaaagcgaatgccgttc |
211 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||| |||||||||||| |
|
|
| T |
29561448 |
tgttacagaaaacagaaaacacggtgaggttttaaggaatggagaaagaaaaacacatgctgctagaggtggactactagttccaaaacgaatgccgttc |
29561349 |
T |
|
| Q |
212 |
caagacattggaaacaacttgtcgttgttgatgaggcagcaaaatggcaaagcagttttccctttgcattgccatctttcttcaaatgctgagaaaacta |
311 |
Q |
| |
|
||||||||||| ||||||| || ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29561348 |
caagacattgggaacaactcttcattgttgacgaggcagcagaatggcaaagcagttttccctttgcattgccatctttcttcaaatgctgagaaaactt |
29561249 |
T |
|
| Q |
312 |
atcgcttgaatgaatgctgatcagttct |
339 |
Q |
| |
|
||| |||||||||| |||||| |||||| |
|
|
| T |
29561248 |
atcacttgaatgaacgctgattagttct |
29561221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 217 - 339
Target Start/End: Complemental strand, 29557541 - 29557421
Alignment:
| Q |
217 |
cattggaaacaacttgtcgttgttgatgaggcagcaaaatggcaaagcagttttccctttgcattgccatctttcttcaaatgctgagaaaactaatcgc |
316 |
Q |
| |
|
||||||||| |||| ||| |||||||||| ||| || | |||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| | | | |
|
|
| T |
29557541 |
cattggaaataactcgtcattgttgatgaagca-cagagtggcaaagcagttttctctttgcattgccatatttcttcaaatgctgag-aaacttagcac |
29557444 |
T |
|
| Q |
317 |
ttgaatgaatgctgatcagttct |
339 |
Q |
| |
|
|||||||||||||||| |||||| |
|
|
| T |
29557443 |
ttgaatgaatgctgataagttct |
29557421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University