View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9985A_low_93 (Length: 344)

Name: NF9985A_low_93
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9985A_low_93
NF9985A_low_93
[»] chr4 (12 HSPs)
chr4 (15-344)||(38145603-38145932)
chr4 (26-287)||(38149468-38149729)
chr4 (159-288)||(36107958-36108087)
chr4 (159-237)||(21482741-21482819)
chr4 (148-236)||(38086358-38086446)
chr4 (148-219)||(36080163-36080234)
chr4 (159-288)||(36100699-36100828)
chr4 (149-218)||(37954200-37954269)
chr4 (148-329)||(38072755-38072936)
chr4 (161-236)||(38058520-38058595)
chr4 (161-236)||(38061859-38061934)
chr4 (159-225)||(34971558-34971624)
[»] chr2 (3 HSPs)
chr2 (26-339)||(11786899-11787212)
chr2 (161-282)||(11803584-11803705)
chr2 (164-216)||(11917650-11917702)
[»] chr6 (1 HSPs)
chr6 (159-237)||(6838770-6838848)


Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 15 - 344
Target Start/End: Complemental strand, 38145932 - 38145603
Alignment:
Q  15 catcaataaaaggtgctacttcttgccatctatgaagaatttttgtagcaccttgttctagagttttagtgacagtaaaaactgtcactgttggtggaac 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38145932 catcaataaaaggtgctacttcttgccatctatgaagaatttttgtagcaccttgttctagagttttagtgacagtaaaaactgtcactgttggtggaac 38145833  T
Q  115 aggaacaagctttatcttccaccaaagaagtataccaaagcttccacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38145832 aggaacaagctttatcttccaccaaagaagtataccaaagcttccacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtca 38145733  T
Q  215 agaatgttacccttcgcatcaacgattcgagcatctaagacattatcaactccaagaccatattttctcatcaatgttccatatgcacctcctgttatgt 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38145732 agaatgttacccttcgcatcaacgattcgagcatctaagacattatcaacaccaagaccatattttctcatcaatgttccatatgcacctcctgttatgt 38145633  T
Q  315 gtccaccaacacctaagcttgtgcacaggc 344  Q
    ||||||||||||||||||||||||||||||    
T  38145632 gtccaccaacacctaagcttgtgcacaggc 38145603  T

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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 287
Target Start/End: Complemental strand, 38149729 - 38149468
Alignment:
Q  26 ggtgctacttcttgccatctatgaagaatttttgtagcaccttgttctagagttttagtgacagtaaaaactgtcactgttggtggaacaggaacaagct 125  Q
    |||||||||| ||||||||||| ||||| |||  |  |||||||||||||| | || || || || ||||||||||| |||  ||| |||||||| |  |    
T  38149729 ggtgctacttgttgccatctataaagaagtttgtttccaccttgttctagactctttgttactgtgaaaactgtcacagtttttggcacaggaactaatt 38149630  T
Q  126 ttatcttccaccaaagaagtataccaaagcttccacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacc 225  Q
    | ||||||||||| ||||  |  || ||||| || ||||| || |||||||| ||||||||||| || |||||||| ||||| ||||||||||| || ||    
T  38149629 tgatcttccaccagagaataactccgaagctacctcctccgcctcctcttattgcccaaaataggtcttctcccattgctttcctgtcaagaatttttcc 38149530  T
Q  226 cttcgcatcaacgattcgagcatctaagacattatcaactccaagaccatattttctcatca 287  Q
     || |||||||| |||||||| || |  || || || || ||||| ||||| ||||||||||    
T  38149529 attagcatcaacaattcgagcgtcaacaacgttgtctacaccaaggccatactttctcatca 38149468  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 159 - 288
Target Start/End: Complemental strand, 36108087 - 36107958
Alignment:
Q  159 cacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaacgattcgagcatctaagacatt 258  Q
    |||| ||||||||||||||||||||||| ||||| |||||||| | |||||| |||||||| ||||||||  ||||||| |||   ||||| |  | |||    
T  36108087 caccaccaccacctcttatagcccaaaaaagatcttctcccattgattttctatcaagaatattacccttaacatcaaccatttttgcatcaataatatt 36107988  T
Q  259 atcaactccaagaccatattttctcatcaa 288  Q
    ||||||   ||||||| |||||||||||||    
T  36107987 atcaacagaaagaccaaattttctcatcaa 36107958  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 159 - 237
Target Start/End: Complemental strand, 21482819 - 21482741
Alignment:
Q  159 cacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaac 237  Q
    |||| ||||||||||||||||||||||| ||||| |||||||| | |||||| ||||| || ||||| ||| |||||||    
T  21482819 caccaccaccacctcttatagcccaaaaaagatcttctcccattgattttctatcaaggatattaccattcacatcaac 21482741  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 38086446 - 38086358
Alignment:
Q  148 accaaagcttccacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaa 236  Q
    |||||| ||| | |||||||||||||| ||||||||||| | |||||| ||||| |||| |||||||||||   |||||||| ||||||    
T  38086446 accaaaacttgctcctccaccacctctaatagcccaaaagaaatcctcacccattgcttctctgtcaagaaacctacccttcacatcaa 38086358  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 36080234 - 36080163
Alignment:
Q  148 accaaagcttccacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaat 219  Q
    |||||| ||| |||| |||||||| |||||||||||||||| ||| |||||||| | |||||| ||||||||    
T  36080234 accaaaacttgcaccaccaccaccccttatagcccaaaataaatcttctcccattgattttctatcaagaat 36080163  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 288
Target Start/End: Complemental strand, 36100828 - 36100699
Alignment:
Q  159 cacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaacgattcgagcatctaagacatt 258  Q
    |||| |||||||| |||||||||||||||||||| |||||||| |  ||||| ||||| || ||||| ||  ||||||| |||   ||||| | || |||    
T  36100828 caccaccaccaccccttatagcccaaaatagatcttctcccattgactttctatcaaggatattaccattgacatcaacaatttttgcatcaatgatatt 36100729  T
Q  259 atcaactccaagaccatattttctcatcaa 288  Q
    |||||    ||||||| |||||||||||||    
T  36100728 atcaatagaaagaccaaattttctcatcaa 36100699  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 37954269 - 37954200
Alignment:
Q  149 ccaaagcttccacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaa 218  Q
    ||||||||| | |||||||| ||||| ||||||||||| |||||||| ||||| | || |||||||||||    
T  37954269 ccaaagcttgctcctccacctcctctaatagcccaaaacagatcctcacccatcgattctctgtcaagaa 37954200  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 329
Target Start/End: Complemental strand, 38072936 - 38072755
Alignment:
Q  148 accaaagcttccacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaacgattcgagca 247  Q
    |||||| ||| | |||||||||||||| ||||||||||| | ||| || ||||| |||| |||||||||||   |||||||| ||||||  ||  |||||    
T  38072936 accaaaacttgctcctccaccacctctaatagcccaaaacaaatcttcacccattgcttctctgtcaagaaacctacccttcacatcaattatgtgagca 38072837  T
Q  248 tctaagacattatcaactccaagaccatattttctcatcaatgttccatatgcacctcctgttatgtgtccaccaacaccta 329  Q
    || | ||| |||||  |  ||||||| ||||| | || ||| ||||||||  |||| ||  | | |||||||||||||||||    
T  38072836 tcaatgacgttatcggccgcaagaccgtatttacgcaacaaggttccatagccaccaccactgaagtgtccaccaacaccta 38072755  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 38058595 - 38058520
Alignment:
Q  161 cctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaa 236  Q
    |||||||||||||| ||||||||||| | ||| || ||||| |||| |||||||||||   |||||||| ||||||    
T  38058595 cctccaccacctctaatagcccaaaacaaatcttcacccattgcttctctgtcaagaaacctacccttcacatcaa 38058520  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 236
Target Start/End: Original strand, 38061859 - 38061934
Alignment:
Q  161 cctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaa 236  Q
    |||||||| ||||| ||||||||||| | |||||| ||||| |||| |||||||||||   |||||||| ||||||    
T  38061859 cctccacctcctctaatagcccaaaaaaaatcctcacccattgcttctctgtcaagaaacctacccttcacatcaa 38061934  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 34971558 - 34971624
Alignment:
Q  159 cacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacc 225  Q
    |||| ||||||||||| ||||||||||| ||||| |||||||| |  ||||| |||||||| |||||    
T  34971558 caccaccaccacctctgatagcccaaaagagatcttctcccattgactttctatcaagaatattacc 34971624  T

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Target: chr2 (Bit Score: 126; Significance: 6e-65; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 26 - 339
Target Start/End: Original strand, 11786899 - 11787212
Alignment:
Q  26 ggtgctacttcttgccatctatgaagaatttttgtagcaccttgttctagagttttagtgacagtaaaaactgtcactgttggtggaacaggaacaagct 125  Q
    |||||||||||||||||| |||||| ||| ||  | ||| |||||||||   |||| || || |||||||| ||||| |||  ||||||||||||||| |    
T  11786899 ggtgctacttcttgccatttatgaacaatcttacttgcatcttgttctaagcttttggtaacggtaaaaaccgtcacggtttttggaacaggaacaagtt 11786998  T
Q  126 ttatcttccaccaaagaagtataccaaagcttccacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacc 225  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| |  ||||| ||||| | |||||| || ||||| || ||    
T  11786999 ttatcttccaccaaagaagaataccaaaacttccacctccaccacctctaatagcccaaaagaattcctcccccatagattttctatcgagaatatttcc 11787098  T
Q  226 cttcgcatcaacgattcgagcatctaagacattatcaactccaagaccatattttctcatcaatgttccatatgcacctcctgttatgtgtccaccaaca 325  Q
     |||||||| || |||   || || |  ||||||||| ||||||||||||| ||||||||||  | ||||||||||||||||||||||||||||||||||    
T  11787099 gttcgcatcgactatttttgcgtcgagaacattatcagctccaagaccatactttctcatcatggatccatatgcacctcctgttatgtgtccaccaaca 11787198  T
Q  326 cctaagcttgtgca 339  Q
    ||||| ||||||||    
T  11787199 cctaaacttgtgca 11787212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 282
Target Start/End: Original strand, 11803584 - 11803705
Alignment:
Q  161 cctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaacgattcgagcatctaagacattat 260  Q
    |||||||| |||||||||||||||||||||||||| |||||   |||||| |  || || || || ||  |||| || ||| ||||||| |  |||||||    
T  11803584 cctccacctcctcttatagcccaaaatagatcctcacccatcaattttctatttaggatctttccattaacatctaccatttgagcatcaattacattat 11803683  T
Q  261 caactccaagaccatattttct 282  Q
    || || ||||||||||||||||    
T  11803684 cagctgcaagaccatattttct 11803705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 11917702 - 11917650
Alignment:
Q  164 ccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaag 216  Q
    ||||||||||||||||||||||| ||||| |||||||| | |||||| |||||    
T  11917702 ccaccacctcttatagcccaaaaaagatcttctcccattgattttctatcaag 11917650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 159 - 237
Target Start/End: Complemental strand, 6838848 - 6838770
Alignment:
Q  159 cacctccaccacctcttatagcccaaaatagatcctctcccatggcttttctgtcaagaatgttacccttcgcatcaac 237  Q
    |||| |||||||||||||| |||||||| ||||| |||||||| | |||||| |||||||| ||||||||  |||||||    
T  6838848 caccaccaccacctcttatggcccaaaaaagatcttctcccattgattttctatcaagaatattacccttaacatcaac 6838770  T

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