View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_94 (Length: 344)
Name: NF9985A_low_94
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_94 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 6 - 338
Target Start/End: Complemental strand, 3683261 - 3682934
Alignment:
| Q |
6 |
ccaagaatatggattgatccagaggctatgtagaaaaaatgagggtctgtgatagtatgctctagaatcaccacatcacaaaaagcaatcaatattccca |
105 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||| |
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| T |
3683261 |
ccaataatatggattgatccagaggctatgtagaaaaaatgagggtctgtgatagtatgctttagaatcaccacagcacaaaaagcaagcaatattccca |
3683162 |
T |
|
| Q |
106 |
acaagatcttcactttcattgacctcttactcaaccatccaatcaaaacactcactgcaaaatccctctttgatcccattttgttgacaaaaaactaaaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3683161 |
acaagatcttcactttcattgacctcttactcaaccatccaatcaaaacattcactgcaaaatccctctttgatcccattttgttgacaaaaaactaaaa |
3683062 |
T |
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| Q |
206 |
ttcagcaaccaaaatagggaggggnnnnnnnnncttctcaagaatttgtatttgtgctcacacaatattttggagtggtgtagttcgattgagtaattgt |
305 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3683061 |
ttcagcaaccaaaata-----ggggttttttttcttctcaagaatttgtatttgtgctcacacaatattttggagtggtgtagttcgattgagtaattgt |
3682967 |
T |
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| Q |
306 |
agtgattggagaatgatgtattgatatggcgtg |
338 |
Q |
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| T |
3682966 |
agtgattggagaatgatgtattgatatggcgtg |
3682934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 6 - 187
Target Start/End: Complemental strand, 3661458 - 3661277
Alignment:
| Q |
6 |
ccaagaatatggattgatccagaggctatgtagaaaaaatgagggtctgtgatagtatgctctagaatcaccacatcacaaaaagcaatcaatattccca |
105 |
Q |
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| T |
3661458 |
ccaataatatggactgtttcagaggctttgaagaaaaaatttggctctctgatagtatgctttagaaccacaatagcacaaaaagcaagcaatattccca |
3661359 |
T |
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| Q |
106 |
acaagatcttcactttcattgacctcttactcaaccatccaatcaaaacactcactgcaaaatccctctttgatcccatttt |
187 |
Q |
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| T |
3661358 |
aaaagatcttcactttcattgatcttttcctcagccatccaaacataacattcaccggtgaatccctctttgatcccatttt |
3661277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 73 - 219
Target Start/End: Complemental strand, 3666291 - 3666146
Alignment:
| Q |
73 |
tcaccacatcacaaaaagcaatcaatattcccaacaagatcttcactttcattgacctcttactcaaccatccaatcaaaacactcactgcaaaatccct |
172 |
Q |
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|||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||| || |||||||| | | ||| ||| |||| | | ||||| | |
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| T |
3666291 |
tcaccacagcacaaaaagcaagcaatattcccaaaaagatcttcactttcattgacctattcctcaaccagctagacaatacattcacgggagaatcctt |
3666192 |
T |
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| Q |
173 |
ctttgatcccattttgttgacaaaaaactaaaattcagcaaccaaaa |
219 |
Q |
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| T |
3666191 |
ctttgatcccattttg-tgaccaaaaataaaaatctagcaaccaaaa |
3666146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 189
Target Start/End: Complemental strand, 3675745 - 3675641
Alignment:
| Q |
85 |
aaaaagcaatcaatattcccaacaagatcttcactttcattgacctcttactcaaccatccaatcaaaacactcactgcaaaatccctctttgatcccat |
184 |
Q |
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|||| |||| |||||||||||| ||||| |||||||||||||| ||||| ||||||||| | ||||||| |||| | ||||||||||||||||||| |
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| T |
3675745 |
aaaatgcaagcaatattcccaaaaagattttcactttcattgatctcttcctcaaccatatagacaaaacattcacaggggaatccctctttgatcccat |
3675646 |
T |
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| Q |
185 |
tttgt |
189 |
Q |
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||||| |
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| T |
3675645 |
tttgt |
3675641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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