View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985A_low_96 (Length: 343)
Name: NF9985A_low_96
Description: NF9985A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985A_low_96 |
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| [»] scaffold0288 (1 HSPs) |
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| [»] scaffold0475 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 4 - 328
Target Start/End: Original strand, 49330543 - 49330860
Alignment:
| Q |
4 |
tctatgaaattgatgaagctgaaatagcggaatcataagcaaatcgtgatgctctacatttttcccgaatcagcaggtagcacagacttgataatcaaat |
103 |
Q |
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| T |
49330543 |
tctatgaaattgatgaagctaaaatggca----cagaagcaaatcgtgatgctctacattttttccgaatcggtaggtagcacagacttgagaatcaaat |
49330638 |
T |
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| Q |
104 |
tggatggggaagctgtaatataagcaactcaactgaacaatttcgctgttttttatttgaagaatttagcagaacaatgtcgaaaaattacaaaggaaaa |
203 |
Q |
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| T |
49330639 |
tggatggtgaaactgaaatataagcaactcaattgaacaatttcgctgttttttatatgtaaaatttagcaaaacagtgtggaaaagttacaaaggaaaa |
49330738 |
T |
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| Q |
204 |
ttataatgtttggtttatgttactatgccgttcgcaagaagggaattaatacatcacatgtgttgactaggaggatatcaatgaataagttgatttgttg |
303 |
Q |
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| T |
49330739 |
ttataatcttaggtttatgttagtatgtcgttcgcaagaagggaagtaatacatcacatgtgttaact---aggatagtaatgaacaagttgaattgttg |
49330835 |
T |
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| Q |
304 |
ttttgtatctattcctccatttgat |
328 |
Q |
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|||||||||||||||||||| |||| |
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| T |
49330836 |
ttttgtatctattcctccatgtgat |
49330860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 4660526 - 4660393
Alignment:
| Q |
5 |
ctatgaaattgatgaagctgaaatagcggaatcataagcaaatcgtgatgctctacatttttcccgaatcagcaggtagcacagacttgataatcaaatt |
104 |
Q |
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| T |
4660526 |
ctatgaaattgatgaagctaaaatagcggaatcataagcaaatcgtgatgctctacatttttcccgaatcagcaggtagcacagacttgataatcaaatt |
4660427 |
T |
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| Q |
105 |
ggatggggaagctgtaatataagcaactcaactg |
138 |
Q |
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| T |
4660426 |
ggatggggaagttgtaatataagcaactcaactg |
4660393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 20688 - 20558
Alignment:
| Q |
8 |
tgaaattgatgaagctgaaatagcggaatcataagcaaatcgtgatgctctacatttttcccgaatcagcaggtagcacagacttgataatcaaattgga |
107 |
Q |
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|||| ||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||| || |||||||||| ||||||||||| |
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| T |
20688 |
tgaatttgataaagctaaaatagcggaatcataagcaaatcgggatgctctacatttttcccaaatcaggaggtggcccagacttgattatcaaattgga |
20589 |
T |
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| Q |
108 |
tggggaagctgtaatataagcaactcaactg |
138 |
Q |
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| T |
20588 |
tggggaagttgtaatataagcaactccactg |
20558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 58 - 138
Target Start/End: Complemental strand, 7771 - 7691
Alignment:
| Q |
58 |
tacatttttcccgaatcagcaggtagcacagacttgataatcaaattggatggggaagctgtaatataagcaactcaactg |
138 |
Q |
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||||||||||| ||||||| |||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||| |
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| T |
7771 |
tacatttttcctgaatcaggaggtagcacagacttgataatcaaatcggagggggaagttgtaatataagcaactcaactg |
7691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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