View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9985_high_16 (Length: 287)

Name: NF9985_high_16
Description: NF9985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9985_high_16
NF9985_high_16
[»] chr5 (2 HSPs)
chr5 (169-280)||(35305350-35305463)
chr5 (135-172)||(21255907-21255944)
[»] chr1 (3 HSPs)
chr1 (169-264)||(9906561-9906661)
chr1 (169-264)||(18703772-18703870)
chr1 (135-172)||(18703882-18703919)
[»] chr7 (2 HSPs)
chr7 (169-264)||(7734612-7734704)
chr7 (169-211)||(41831942-41831984)
[»] chr4 (1 HSPs)
chr4 (169-264)||(5444036-5444128)
[»] chr8 (3 HSPs)
chr8 (169-206)||(29865087-29865124)
chr8 (169-211)||(7275901-7275943)
chr8 (169-211)||(26174760-26174802)
[»] scaffold1412 (1 HSPs)
scaffold1412 (169-211)||(542-584)
[»] scaffold0001 (1 HSPs)
scaffold0001 (169-211)||(145401-145443)
[»] chr6 (1 HSPs)
chr6 (169-211)||(6823813-6823855)
[»] chr2 (3 HSPs)
chr2 (169-211)||(31270221-31270263)
chr2 (141-172)||(24038752-24038783)
chr2 (170-211)||(24038796-24038837)
[»] scaffold0525 (1 HSPs)
scaffold0525 (169-211)||(6682-6724)


Alignment Details
Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 169 - 280
Target Start/End: Complemental strand, 35305463 - 35305350
Alignment:
Q  169 atggtttgaagacacatcacatggctatgcctctccattggctccttgtttctttgtt--tgttgacatgccctgtagtttaccggttgcatttggttcc 266  Q
    |||||||||||||||||  ||||||||||| |||| |||||||| |||||  ||||||  ||||||||||||||||||||||| |||| ||||||||||     
T  35305463 atggtttgaagacacattgcatggctatgcatctctattggctcattgttcttttgttgctgttgacatgccctgtagtttacaggtttcatttggttct 35305364  T
Q  267 ttttgtctctgctc 280  Q
    ||||||||| ||||    
T  35305363 ttttgtctcggctc 35305350  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 172
Target Start/End: Original strand, 21255907 - 21255944
Alignment:
Q  135 cattgattttgacctatggtttgaatgcatcaacatgg 172  Q
    ||||| ||||| ||||||||||||||||||||||||||    
T  21255907 cattggttttggcctatggtttgaatgcatcaacatgg 21255944  T

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Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 169 - 264
Target Start/End: Complemental strand, 9906661 - 9906561
Alignment:
Q  169 atggtttgaagacacatcacatggctatgcctctccattggctccttgtttctttgtttgttg-----acatgccctgtagtttaccggttgcatttggt 263  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||| ||| |||||||     |||||||||||||| ||| |||||||||||||    
T  9906661 atggtttgaagacatatcacatggctatgcatctccattggctccttgtttttttttttgttgctgttacatgccctgtagtatacaggttgcatttggt 9906562  T
Q  264 t 264  Q
    |    
T  9906561 t 9906561  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 169 - 264
Target Start/End: Complemental strand, 18703870 - 18703772
Alignment:
Q  169 atggtttgaagacacatcacatggctatgcctctccattggctccttgtttct-ttgt--ttgttgacatgccctgtagtttaccggttgcatttggtt 264  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||| | ||||  |||||||||||||||||||  ||| ||||||||||||||    
T  18703870 atggtttgaagacacatcacatggctatgcatctctattggctccttgtttttgttgttgttgttgacatgccctgtagcatacaggttgcatttggtt 18703772  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 172
Target Start/End: Complemental strand, 18703919 - 18703882
Alignment:
Q  135 cattgattttgacctatggtttgaatgcatcaacatgg 172  Q
    ||||| ||||| ||||||||||||||||||||||||||    
T  18703919 cattggttttggcctatggtttgaatgcatcaacatgg 18703882  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 264
Target Start/End: Original strand, 7734612 - 7734704
Alignment:
Q  169 atggtttgaagacacatcacatggctatgcctctccattggctccttgtttctttgtttgttgacatgccctgtagtttaccggttgcatttggtt 264  Q
    |||||||||||||||||||||||||||||| |||||||||| ||    ||| ||| ||| ||||||||||||||||||||| |||||| |||||||    
T  7734612 atggtttgaagacacatcacatggctatgcatctccattggatc---tttttttttttttttgacatgccctgtagtttacaggttgcttttggtt 7734704  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 41831942 - 41831984
Alignment:
Q  169 atggtttgaagacacatcacatggctatgcctctccattggct 211  Q
    ||||||||||||||| |||||||||||||| |||| |||||||    
T  41831942 atggtttgaagacacctcacatggctatgcatctctattggct 41831984  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 169 - 264
Target Start/End: Original strand, 5444036 - 5444128
Alignment:
Q  169 atggtttgaagacacatcacatggctatgcctctccattggctccttgtttctttgtttg---ttgacatgccctgtagtttaccggttgcatttggtt 264  Q
    ||||||||||||||||||||||||| ||||      ||||||||||||||| ||||||||   ||||||||||||||||| |||  |||||||||||||    
T  5444036 atggtttgaagacacatcacatggccatgc------attggctccttgtttttttgtttgctgttgacatgccctgtagtatacaagttgcatttggtt 5444128  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 29865124 - 29865087
Alignment:
Q  169 atggtttgaagacacatcacatggctatgcctctccat 206  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29865124 atggtttgaagacacatcacatggctatgcctctccat 29865087  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 7275943 - 7275901
Alignment:
Q  169 atggtttgaagacacatcacatggctatgcctctccattggct 211  Q
    ||||||||||||||| |||||||||||||| |||| |||||||    
T  7275943 atggtttgaagacacctcacatggctatgcatctctattggct 7275901  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Original strand, 26174760 - 26174802
Alignment:
Q  169 atggtttgaagacacatcacatggctatgcctctccattggct 211  Q
    |||||||||||||| ||||||||||||||| |||| |||||||    
T  26174760 atggtttgaagacatatcacatggctatgcatctctattggct 26174802  T

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Target: scaffold1412 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1412
Description:

Target: scaffold1412; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 584 - 542
Alignment:
Q  169 atggtttgaagacacatcacatggctatgcctctccattggct 211  Q
    |||||||||||||||||||||||||||||| |||| |||||||    
T  584 atggtttgaagacacatcacatggctatgcatctctattggct 542  T

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Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 145443 - 145401
Alignment:
Q  169 atggtttgaagacacatcacatggctatgcctctccattggct 211  Q
    |||||||||||||||||||||||||||||| |||| |||||||    
T  145443 atggtttgaagacacatcacatggctatgcatctctattggct 145401  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 6823855 - 6823813
Alignment:
Q  169 atggtttgaagacacatcacatggctatgcctctccattggct 211  Q
    |||||||||||||||||||||||||||||| |||| |||||||    
T  6823855 atggtttgaagacacatcacatggctatgcatctctattggct 6823813  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 31270263 - 31270221
Alignment:
Q  169 atggtttgaagacacatcacatggctatgcctctccattggct 211  Q
    |||||||||||||||||||||||||||||| |||| |||||||    
T  31270263 atggtttgaagacacatcacatggctatgcatctcgattggct 31270221  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 172
Target Start/End: Original strand, 24038752 - 24038783
Alignment:
Q  141 ttttgacctatggtttgaatgcatcaacatgg 172  Q
    ||||||||||||||||||||||||||||||||    
T  24038752 ttttgacctatggtttgaatgcatcaacatgg 24038783  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 211
Target Start/End: Original strand, 24038796 - 24038837
Alignment:
Q  170 tggtttgaagacacatcacatggctatgcctctccattggct 211  Q
    |||||||||||||| |||||||||||||| |||| |||||||    
T  24038796 tggtttgaagacacctcacatggctatgcatctctattggct 24038837  T

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Target: scaffold0525 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 6724 - 6682
Alignment:
Q  169 atggtttgaagacacatcacatggctatgcctctccattggct 211  Q
    ||||||||||||||| |||||||||||||| |||| |||||||    
T  6724 atggtttgaagacacctcacatggctatgcatctctattggct 6682  T

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