View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9985_high_21 (Length: 249)

Name: NF9985_high_21
Description: NF9985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9985_high_21
NF9985_high_21
[»] chr7 (6 HSPs)
chr7 (3-236)||(41592944-41593177)
chr7 (3-236)||(41384234-41384467)
chr7 (3-127)||(41385659-41385781)
chr7 (3-119)||(41591600-41591714)
chr7 (32-110)||(706857-706935)
chr7 (28-110)||(33823872-33823954)
[»] chr2 (14 HSPs)
chr2 (3-236)||(43517818-43518051)
chr2 (3-236)||(40127325-40127553)
chr2 (44-236)||(42828748-42828939)
chr2 (3-119)||(40128787-40128901)
chr2 (3-119)||(43516483-43516597)
chr2 (11-127)||(10344999-10345113)
chr2 (3-127)||(42827401-42827524)
chr2 (6-76)||(44819857-44819927)
chr2 (10-76)||(22054426-22054492)
chr2 (128-221)||(31559293-31559386)
chr2 (11-127)||(42929026-42929140)
chr2 (10-73)||(22060064-22060127)
chr2 (11-71)||(42931681-42931741)
chr2 (36-105)||(18224717-18224786)
[»] chr3 (15 HSPs)
chr3 (10-236)||(31200687-31200913)
chr3 (17-118)||(44460200-44460301)
chr3 (11-127)||(27320547-27320663)
chr3 (126-227)||(27320425-27320526)
chr3 (11-127)||(27362305-27362421)
chr3 (3-119)||(31199334-31199447)
chr3 (132-227)||(27361399-27361494)
chr3 (11-127)||(24613464-24613578)
chr3 (11-127)||(33781345-33781459)
chr3 (12-75)||(24612371-24612434)
chr3 (177-221)||(27319714-27319758)
chr3 (124-165)||(34594456-34594497)
chr3 (180-227)||(27362190-27362237)
chr3 (124-161)||(1677178-1677215)
chr3 (124-161)||(13645048-13645085)
[»] chr6 (11 HSPs)
chr6 (3-234)||(19579977-19580209)
chr6 (3-153)||(19596428-19596578)
chr6 (27-127)||(28050212-28050312)
chr6 (3-127)||(19597829-19597951)
chr6 (3-127)||(12599982-12600104)
chr6 (12-75)||(843422-843485)
chr6 (10-77)||(11065553-11065620)
chr6 (10-76)||(19402022-19402088)
chr6 (11-127)||(842279-842393)
chr6 (11-126)||(20773294-20773407)
chr6 (10-77)||(30321064-30321131)
[»] chr1 (20 HSPs)
chr1 (14-231)||(27524363-27524602)
chr1 (3-127)||(42300538-42300660)
chr1 (124-236)||(28253354-28253467)
chr1 (132-236)||(37402370-37402474)
chr1 (3-127)||(52793789-52793911)
chr1 (14-127)||(28253486-28253599)
chr1 (180-236)||(28252183-28252239)
chr1 (3-58)||(9627500-9627555)
chr1 (17-127)||(28252030-28252139)
chr1 (126-236)||(37401229-37401340)
chr1 (124-221)||(9419556-9419653)
chr1 (10-77)||(8322612-8322679)
chr1 (12-75)||(26734522-26734585)
chr1 (10-77)||(31810082-31810149)
chr1 (11-76)||(9626563-9626628)
chr1 (10-77)||(8323339-8323406)
chr1 (10-77)||(31815670-31815737)
chr1 (13-127)||(42301469-42301581)
chr1 (124-158)||(43882249-43882283)
chr1 (176-228)||(11429486-11429538)
[»] chr8 (12 HSPs)
chr8 (11-126)||(37963367-37963481)
chr8 (126-227)||(37964378-37964478)
chr8 (11-127)||(358071-358185)
chr8 (27-127)||(27411091-27411190)
chr8 (11-127)||(37964499-37964615)
chr8 (12-75)||(359215-359278)
chr8 (11-127)||(21143880-21143994)
chr8 (11-127)||(27409855-27409971)
chr8 (126-227)||(27409992-27410093)
chr8 (28-110)||(36900009-36900091)
chr8 (177-227)||(37963554-37963604)
chr8 (32-110)||(17706279-17706357)
[»] scaffold0517 (2 HSPs)
scaffold0517 (132-236)||(5602-5706)
scaffold0517 (126-236)||(6736-6847)
[»] chr5 (3 HSPs)
chr5 (12-127)||(13373861-13373974)
chr5 (11-127)||(9671053-9671167)
chr5 (11-76)||(13375220-13375285)
[»] scaffold0060 (1 HSPs)
scaffold0060 (11-76)||(13149-13214)
[»] chr4 (13 HSPs)
chr4 (3-76)||(55019258-55019331)
chr4 (11-127)||(4906222-4906336)
chr4 (11-127)||(4932091-4932205)
chr4 (11-127)||(7108306-7108420)
chr4 (11-127)||(29757459-29757573)
chr4 (3-71)||(38158536-38158604)
chr4 (12-75)||(4907363-4907426)
chr4 (12-75)||(4933232-4933295)
chr4 (12-75)||(29756366-29756429)
chr4 (11-165)||(23703672-23703828)
chr4 (124-161)||(2671737-2671774)
chr4 (11-76)||(22674245-22674310)
chr4 (11-59)||(35786595-35786643)
[»] scaffold0129 (1 HSPs)
scaffold0129 (10-77)||(4158-4225)


Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 3 - 236
Target Start/End: Complemental strand, 41593177 - 41592944
Alignment:
Q  3 tattttgataaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggc 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41593177 tattttgataaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttatgagttggc 41593078  T
Q  103 aaacgttgatgagatggcatgagagggactaaaaccaaaaacgaaaattgacatagggatgaatttnnnnnnngtaaacatcaaattttgaattttaaaa 202  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||       |||||||||||||||||||||||||||    
T  41593077 aaacgttgatgagttggcatgagagggactaaaaccaaaaacgaaaattgacatagggatgaaattaaaaaaagtaaacatcaaattttgaattttaaaa 41592978  T
Q  203 atcaaactttccatcttctgcctctcactattct 236  Q
    ||||||||||||||||||| ||||||||||||||    
T  41592977 atcaaactttccatcttcttcctctcactattct 41592944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 3 - 236
Target Start/End: Original strand, 41384234 - 41384467
Alignment:
Q  3 tattttgataaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggc 102  Q
    |||||||||||||||||| ||||||| |||||||||||||| |||||  ||||| | ||||||||||||||||||||||||||||||| ||| |||||||    
T  41384234 tattttgataaccttttggaaaaggttcttgccgtcagctttcgtcatcaaaaatgttttggtggctaacggaggcctacgtggcaggctctaagttggc 41384333  T
Q  103 aaacgttgatgagatggcatgagagggactaaaaccaaaaacgaaaattgacatagggatgaatttnnnnnnngtaaacatcaaattttgaattttaaaa 202  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||| ||||||||||||    
T  41384334 aaacgttgatgaaatggcatgagagggactaaaaccaaaaacgaaaattgacatagggatgaatttaaaaaaaataaacatcaaattctgaattttaaaa 41384433  T
Q  203 atcaaactttccatcttctgcctctcactattct 236  Q
    ||||||||||||||||||| ||||||||||||||    
T  41384434 atcaaactttccatcttcttcctctcactattct 41384467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 3 - 127
Target Start/End: Complemental strand, 41385781 - 41385659
Alignment:
Q  3 tattttgataaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggc 102  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |   |||||||||||||| ||| |||||||||||  ||||||||     
T  41385781 tattttgataaccttttggaaaaggtccttgccgtcagcttccgtcaacaaaaatgtcatggtggctaacgga-gcccacgtggcaggtcatgagttgg- 41385684  T
Q  103 aaacgttgatgagatggcatgagag 127  Q
    |||  ||||||||||  ||||||||    
T  41385683 aaaaattgatgagataacatgagag 41385659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 119
Target Start/End: Original strand, 41591600 - 41591714
Alignment:
Q  3 tattttgataaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggc 102  Q
    |||||||||||||||||| |||||||| ||| ||| |||||||||||| ||||||||  || ||||||||||| ||  ||||||||| |  |||||||||    
T  41591600 tattttgataaccttttggaaaaggtcattgtcgttagcttccgtcaacaaaaacgcaatgctggctaacgga-gcacacgtggcagatcatgagttggc 41591698  T
Q  103 aaacgttgatgagatgg 119  Q
    ||| |||||||||||||    
T  41591699 aaa-gttgatgagatgg 41591714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 110
Target Start/End: Original strand, 706857 - 706935
Alignment:
Q  32 tgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggcaaacgttg 110  Q
    ||||||||| ||||||||| ||||| || ||| ||| |||||||| |  ||||||||| ||||||||||||||| ||||    
T  706857 tgccgtcaggttccgtcaacaaaaaagcattgctgggtaacggagacacacgtggcagtttctgagttggcaaaagttg 706935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 33823872 - 33823954
Alignment:
Q  28 tccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggcaaacgttg 110  Q
    ||||||||||||| |||| |||| ||||| || ||||||  |||||||| |  ||||||||| ||||||||||||||| ||||    
T  33823872 tccttgccgtcaggttccatcaacaaaaaagcattggtgtgtaacggagacacacgtggcagtttctgagttggcaaaagttg 33823954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 3 - 236
Target Start/End: Complemental strand, 43518051 - 43517818
Alignment:
Q  3 tattttgataaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggc 102  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  43518051 tattttgataaccttttgaaaaaggtcattgccgtcagcttccgtcaataaaaacgctttggtggctaactgaggcctacgtggcaggttctgagttggc 43517952  T
Q  103 aaacgttgatgagatggcatgagagggactaaaaccaaaaacgaaaattgacatagggatgaatttnnnnnnngtaaacatcaaattttgaattttaaaa 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  43517951 aaacgttgatgagatggcatgagagggactaaaaccaaaaacgaaaattgacatagggatgaatttaaaaaaagtaaacatcaaattttgaattttaaaa 43517852  T
Q  203 atcaaactttccatcttctgcctctcactattct 236  Q
    || |||||||||||||||| ||||||||||||||    
T  43517851 attaaactttccatcttctccctctcactattct 43517818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 3 - 236
Target Start/End: Original strand, 40127325 - 40127553
Alignment:
Q  3 tattttgataaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggc 102  Q
    ||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  40127325 tattttgataatcttttgaaaaaggtccttaccgtcaacttccgtcaataaaaacgctttggtggctaacggaggcctacatggcaggttatgagttggc 40127424  T
Q  103 aaacgttgatgagatggcatgagagggactaaaaccaaaaacgaaaattgacatagggatgaatttnnnnnnngtaaacatcaaattttgaattttaaaa 202  Q
    ||      ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||| ||||||||||    
T  40127425 aac-----atgagttggcatgagagggactaaaaccaaaaacgaaaattgacatagggatgaatttaaaaaaagtaaacatcaaattttaaattttaaaa 40127519  T
Q  203 atcaaactttccatcttctgcctctcactattct 236  Q
    ||||||||||||||||||| ||||||||||||||    
T  40127520 atcaaactttccatcttcttcctctcactattct 40127553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 44 - 236
Target Start/End: Complemental strand, 42828939 - 42828748
Alignment:
Q  44 ccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggcaaacgttgatgagatggcatgagagggactaaaaccaaaaa 143  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  42828939 ccgtcaacaaaaacgttttggtggctaacggaggcctacgtggcaggttttaagttggcaaacgttgatgaaatggtatgagagggactaaaatcaaaaa 42828840  T
Q  144 cgaaaattgacatagggatgaattt-nnnnnnngtaaacatcaaattttgaattttaaaaatcaaactttccatcttctgcctctcactattct 236  Q
    ||||||||  |||||||||||||||        ||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||    
T  42828839 cgaaaatt--catagggatgaatttaaaaaaatgtaaacatcaaattttgaattttaaaaatcaaattttccatcttcttccactcactattct 42828748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 3 - 119
Target Start/End: Complemental strand, 40128901 - 40128787
Alignment:
Q  3 tattttgataaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggc 102  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||  |||||||  || ||||||||||| ||  |||||||||||  |||||||||    
T  40128901 tattttgataaccttttggaaaaggtccttgccgttagcttccgtcaacgaaaacgcaatgctggctaacgga-gcacacgtggcaggtcatgagttggc 40128803  T
Q  103 aaacgttgatgagatgg 119  Q
    ||| |||||||||||||    
T  40128802 aaa-gttgatgagatgg 40128787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 3 - 119
Target Start/End: Original strand, 43516483 - 43516597
Alignment:
Q  3 tattttgataaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggc 102  Q
    |||||||||||||||||| ||||||| ||| ||||||||||||||||| ||||||||  || ||||||||||| ||  |||||||||||  |||||||||    
T  43516483 tattttgataaccttttggaaaaggttcttaccgtcagcttccgtcaacaaaaacgcaatgctggctaacgga-gcacacgtggcaggtcatgagttggc 43516581  T
Q  103 aaacgttgatgagatgg 119  Q
    ||| |||||||||||||    
T  43516582 aaa-gttgatgagatgg 43516597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 10345113 - 10344999
Alignment:
Q  11 taaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggcaaacgttg 110  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||| |   |||||||||||||| ||  ||||||||| |  |||||||||||| ||||    
T  10345113 taaccttttggaaaaggtccttgccgtcagcttccgtcaacaaaaatgtcatggtggctaacgga-gcacacgtggcagctcatgagttggcaaa-gttg 10345016  T
Q  111 atgagatggcatgagag 127  Q
    ||||||||| |||||||    
T  10345015 atgagatggaatgagag 10344999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 42827401 - 42827524
Alignment:
Q  3 tattttgataaccttttgaaaaaggtccttgccg-tcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttgg 101  Q
    |||||||||||||||||| ||||||| ||||||  |||||||||||||| ||||||||| ||||||||||| || ||  |||||||||||  ||||||||    
T  42827401 tattttgataaccttttggaaaaggtacttgcccatcagcttccgtcaacaaaaacgctatggtggctaacaga-gcacacgtggcaggtcatgagttgg 42827499  T
Q  102 caaacgttgatgagatggcatgagag 127  Q
     |||  |||||||||||| |||||||    
T  42827500 -aaaaattgatgagatggtatgagag 42827524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 6 - 76
Target Start/End: Original strand, 44819857 - 44819927
Alignment:
Q  6 tttgataaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggag 76  Q
    |||| |||||||||| ||||||||||||||||||||||| ||||| ||||||||  |||||||||||||||    
T  44819857 tttgctaaccttttggaaaaggtccttgccgtcagcttcagtcaacaaaaacgccatggtggctaacggag 44819927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 22054426 - 22054492
Alignment:
Q  10 ataaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggag 76  Q
    ||||| ||||||||||||||||||||||||||||| || || ||||||||  | |||||||||||||    
T  22054426 ataacattttgaaaaaggtccttgccgtcagcttctgttaacaaaaacgccattgtggctaacggag 22054492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 221
Target Start/End: Complemental strand, 31559386 - 31559293
Alignment:
Q  128 ggactaaaaccaaaaacgaaaattgacatagggatgaatttnnnnnnngtaaacatcaaattttgaattttaaaaatcaaactttccatcttct 221  Q
    |||||||||||||||||||| ||| ||||||||||||| ||       |||| |||| ||||||||| ||||||||||||  |||||| |||||    
T  31559386 ggactaaaaccaaaaacgaatatttacatagggatgaaattaaaacacgtaatcatcgaattttgaaatttaaaaatcaatatttccaccttct 31559293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 42929026 - 42929140
Alignment:
Q  11 taaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggcaaacgttg 110  Q
    ||||||||||||||  |||||||| ||||||||| ||||| ||||||||  || ||||||||||| ||  | |||||| ||  |||||||||| |  |||    
T  42929026 taaccttttgaaaatagtccttgctgtcagcttctgtcaaaaaaaacgccatgatggctaacgga-gcaaaggtggcaagtcatgagttggcaca-tttg 42929123  T
Q  111 atgagatggcatgagag 127  Q
    |||||||||||||||||    
T  42929124 atgagatggcatgagag 42929140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 22060127 - 22060064
Alignment:
Q  10 ataaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacg 73  Q
    ||||| ||||||||||||||||||||||||||||| || || ||||||||  | ||||||||||    
T  22060127 ataacattttgaaaaaggtccttgccgtcagcttctgttaacaaaaacgcaattgtggctaacg 22060064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 42931741 - 42931681
Alignment:
Q  11 taaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaa 71  Q
    ||||||||||||||  ||||||| |||||||||| ||||| ||||||||  ||||||||||    
T  42931741 taaccttttgaaaatagtccttgtcgtcagcttctgtcaacaaaaacgccatggtggctaa 42931681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 18224786 - 18224717
Alignment:
Q  36 gtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggcaaa 105  Q
    ||||| ||||||||| ||||| || ||| ||| |||||||| |  ||||||||| |||||||||||||||    
T  18224786 gtcaggttccgtcaacaaaaaagcattgatggataacggagacacacgtggcagtttctgagttggcaaa 18224717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 170; Significance: 2e-91; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 10 - 236
Target Start/End: Complemental strand, 31200913 - 31200687
Alignment:
Q  10 ataaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggcaaacgtt 109  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||| |||||||||||||||||||||||||||||||    
T  31200913 ataaccttttgaaaaaggtccttgccgtcagcttccgtcaacaaaaacactctggtggctaacggaggtctacgtggcaggttctgagttggcaaacgtt 31200814  T
Q  110 gatgagatggcatgagagggactaaaaccaaaaacgaaaattgacatagggatgaatttnnnnnnngtaaacatcaaattttgaattttaaaaatcaaac 209  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||       ||||||||||||||||||||||||||||||||||    
T  31200813 gatgagatggcatgagagggactaaaaccaaaaacaaaaattgacataggcatgaattttaaaaaagtaaacatcaaattttgaattttaaaaatcaaac 31200714  T
Q  210 tttccatcttctgcctctcactattct 236  Q
    |||| |||||||  |||||||||||||    
T  31200713 tttcgatcttcttgctctcactattct 31200687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 44460301 - 44460200
Alignment:
Q  17 tttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggcaaacgttgatgaga 116  Q
    ||||||||  ||||||| |||||| ||||||||| ||||||||||| |||| ||||||||||||| |||||| ||| |||||||||||| |||| |||||    
T  44460301 tttgaaaatcgtccttgtcgtcaggttccgtcaacaaaaacgctttagtgggtaacggaggcctaggtggcacgttttgagttggcaaaagttgttgaga 44460202  T
Q  117 tg 118  Q
    ||    
T  44460201 tg 44460200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 27320663 - 27320547
Alignment:
Q  11 taaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggcaaacgttg 110  Q
    |||||||||| |||  |||||||||||||| ||||||||| ||||| ||||| |||| |||| |||||    ||||||||||||||||||||||| ||||    
T  27320663 taaccttttggaaatcgtccttgccgtcaggttccgtcaacaaaaatgcttttgtgggtaacagaggcacgtgtggcaggttctgagttggcaaaagttg 27320564  T
Q  111 atgagatggcatgagag 127  Q
     |||| |||||||||||    
T  27320563 ttgaggtggcatgagag 27320547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 126 - 227
Target Start/End: Complemental strand, 27320526 - 27320425
Alignment:
Q  126 agggactaaaaccaaaaacgaaaattgacatagggatgaatttnnnnnnngtaaacatcaaattttgaattttaaaaatcaaactttccatcttctgcct 225  Q
    ||||||||||| |||||||||||||| |||||||||||||  |       ||| |||| ||||||||||||||||||| ||||||||||||||||| |||    
T  27320526 agggactaaaatcaaaaacgaaaatttacatagggatgaaaataaaaaacgtagacattaaattttgaattttaaaaaccaaactttccatcttcttcct 27320427  T
Q  226 ct 227  Q
    ||    
T  27320426 ct 27320425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 27362421 - 27362305
Alignment:
Q  11 taaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggcaaacgttg 110  Q
    ||||||||||||||  || ||||||||||| ||||||||| ||||| ||||| |||| |||| |||||    || |||||||||||||||||||| ||||    
T  27362421 taaccttttgaaaattgtacttgccgtcagattccgtcaacaaaaatgcttttgtgggtaacagaggcacgtgttgcaggttctgagttggcaaaagttg 27362322  T
Q  111 atgagatggcatgagag 127  Q
     |||| |||||||||||    
T  27362321 ctgaggtggcatgagag 27362305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 119
Target Start/End: Original strand, 31199334 - 31199447
Alignment:
Q  3 tattttgataaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggc 102  Q
    |||||||||| |||||||| |||||||||||||||||| ||||||||| ||||||||  || ||||||||||| ||  ||||||||| |  |||||||||    
T  31199334 tattttgata-ccttttgataaaggtccttgccgtcagattccgtcaacaaaaacgccatgctggctaacgga-gcacacgtggcagatcatgagttggc 31199431  T
Q  103 aaacgttgatgagatgg 119  Q
    ||| |||||||||||||    
T  31199432 aaa-gttgatgagatgg 31199447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 227
Target Start/End: Original strand, 27361399 - 27361494
Alignment:
Q  132 taaaaccaaaaacgaaaattgacatagggatgaatttnnnnnnngtaaacatcaaattttgaattttaaaaatcaaactttccatcttctgcctct 227  Q
    |||||||||||||  ||||| ||||||||||||| ||        |||| ||||||||||||||||||||||||||| |||||||||||| |||||    
T  27361399 taaaaccaaaaacacaaatttacatagggatgaaattaaaaaacctaaatatcaaattttgaattttaaaaatcaaattttccatcttcttcctct 27361494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 24613578 - 24613464
Alignment:
Q  11 taaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggcaaacgttg 110  Q
    |||||||||||||| |||||||||||| |||||| ||||| ||||||||    |||||||||||| ||  | |||||| ||| |||||||||| |  |||    
T  24613578 taaccttttgaaaatggtccttgccgttagcttctgtcaacaaaaacgccactgtggctaacgga-gcacaagtggcaagttatgagttggcaca-tttg 24613481  T
Q  111 atgagatggcatgagag 127  Q
    |||||||||||||||||    
T  24613480 atgagatggcatgagag 24613464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 33781459 - 33781345
Alignment:
Q  11 taaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggcaaacgttg 110  Q
    |||||||||||||| |||||||||||| |||||| ||||| ||||||||  | |||||||||||| ||  | |||||| ||  |||||||||| |  |||    
T  33781459 taaccttttgaaaatggtccttgccgttagcttctgtcaacaaaaacgccattgtggctaacgga-gcacatgtggcaagtcatgagttggcaca-tttg 33781362  T
Q  111 atgagatggcatgagag 127  Q
    |||||||||||||||||    
T  33781361 atgagatggcatgagag 33781345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 24612371 - 24612434
Alignment:
Q  12 aaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacgga 75  Q
    |||||||||||||  |||||||||||||||||| ||||| ||||||||  ||||||||||||||    
T  24612371 aaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacgga 24612434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 27319714 - 27319758
Alignment:
Q  177 taaacatcaaattttgaattttaaaaatcaaactttccatcttct 221  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||    
T  27319714 taaatatcaaattttgaattttaaaaatcaaattttccatcttct 27319758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 34594456 - 34594497
Alignment:
Q  124 agagggactaaaaccaaaaacgaaaattgacatagggatgaa 165  Q
    |||||||||||||||||||||| ||||| |||||||||||||    
T  34594456 agagggactaaaaccaaaaacggaaatttacatagggatgaa 34594497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 27362237 - 27362190
Alignment:
Q  180 acatcaaattttgaattttaaaaatcaaactttccatcttctgcctct 227  Q
    |||| ||||||||||||||||||| ||||| ||||||||||| |||||    
T  27362237 acattaaattttgaattttaaaaaccaaacgttccatcttcttcctct 27362190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 1677178 - 1677215
Alignment:
Q  124 agagggactaaaaccaaaaacgaaaattgacataggga 161  Q
    |||||||||||||||||||||| ||||| |||||||||    
T  1677178 agagggactaaaaccaaaaacgcaaatttacataggga 1677215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 13645048 - 13645085
Alignment:
Q  124 agagggactaaaaccaaaaacgaaaattgacataggga 161  Q
    |||||||||||||||||||||| ||||| |||||||||    
T  13645048 agagggactaaaaccaaaaacgcaaatttacataggga 13645085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 3 - 234
Target Start/End: Original strand, 19579977 - 19580209
Alignment:
Q  3 tattttgataaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggc 102  Q
    |||||||||||||||||| |||||||||||| |||||||||||||||| ||||||| |||||||||||||  |||||||||||||||||||| |||||||    
T  19579977 tattttgataaccttttggaaaaggtccttgtcgtcagcttccgtcaacaaaaacgttttggtggctaacaaaggcctacgtggcaggttctaagttggc 19580076  T
Q  103 aaacgttgatgagatggcatgagagggactaaaaccaaaaacgaaaattgacatagggatgaattt-nnnnnnngtaaacatcaaattttgaattttaaa 201  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||        |||||||||||||||| |||||||||    
T  19580077 aaacgttgataatatggcatgagagggactaaaaccaaaaacgaaaattaacatagggatgaatttaaaaaaaagtaaacatcaaatttttaattttaaa 19580176  T
Q  202 aatcaaactttccatcttctgcctctcactatt 234  Q
    |||||||||||||||||||| ||||||||||||    
T  19580177 aatcaaactttccatcttcttcctctcactatt 19580209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 3 - 153
Target Start/End: Original strand, 19596428 - 19596578
Alignment:
Q  3 tattttgataaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggc 102  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  19596428 tattttgataaccttttgaaaaaggtccttgccatcagcttccgtcaacaaaaacgttttggtggctaacggaggcctacgtggcaggttctaagttggc 19596527  T
Q  103 aaacgttgatgagatggcatgagagggactaaaaccaaaaacgaaaattga 153  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  19596528 aaacgttgatgaaatggcatgagagggactaaaaccaaaaacgaaaattga 19596578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 28050312 - 28050212
Alignment:
Q  27 gtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggcaaacgttgatgagatggcatgaga 126  Q
    |||||||||||||| ||||||||| |||||||||||||||  ||||||||||||| |||||| |||||||||||||||| |||| ||||||| |||||||    
T  28050312 gtccttgccgtcaggttccgtcaacaaaaacgctttggtgagtaacggaggcctaggtggcacgttctgagttggcaaaagttgctgagatgacatgaga 28050213  T
Q  127 g 127  Q
    |    
T  28050212 g 28050212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 127
Target Start/End: Complemental strand, 19597951 - 19597829
Alignment:
Q  3 tattttgataaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggc 102  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||  |||||||||||||| ||  ||||||||| |  ||||||||     
T  19597951 tattttgataaccttttggaaaaggtccttgccgtcagcttccgtcaacaaaaacgccatggtggctaacgga-gcacacgtggcagatcatgagttgg- 19597854  T
Q  103 aaacgttgatgagatggcatgagag 127  Q
    |||  ||||||||||| ||||||||    
T  19597853 aaaaattgatgagatgacatgagag 19597829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 12599982 - 12600104
Alignment:
Q  3 tattttgataaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggc 102  Q
    ||||||| |||||||||| |||||||||||||||||| ||| |||||| |||||| |   |||| |||||||| ||  || |||||| |  |||||||||    
T  12599982 tattttgctaaccttttggaaaaggtccttgccgtcaactttcgtcaacaaaaacaccacggtgactaacgga-gcacacatggcagttcatgagttggc 12600080  T
Q  103 aaacgttgatgagatggcatgagag 127  Q
    ||| ||||||||||||| |||||||    
T  12600081 aaa-gttgatgagatggaatgagag 12600104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 843485 - 843422
Alignment:
Q  12 aaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacgga 75  Q
    |||||||||||||  |||||||||||||||||| ||||| ||||||||  ||||||||||||||    
T  843485 aaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacgga 843422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 11065620 - 11065553
Alignment:
Q  10 ataaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggagg 77  Q
    ||||| ||||||||||||||||||||||||||||| || || ||||||||  | ||||||||||||||    
T  11065620 ataacattttgaaaaaggtccttgccgtcagcttctgttaacaaaaacgccattgtggctaacggagg 11065553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 19402088 - 19402022
Alignment:
Q  10 ataaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggag 76  Q
    ||||||||||||||||||||||||||||||||||  ||||| ||||| ||  | |||||||||||||    
T  19402088 ataaccttttgaaaaaggtccttgccgtcagcttatgtcaacaaaaatgccattgtggctaacggag 19402022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 842279 - 842393
Alignment:
Q  11 taaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggcaaacgttg 110  Q
    |||||||||||||| |||||||||||| |||||| ||||| ||||||||    |||||||||||| ||  | |||||| ||| |||||||||| |  |||    
T  842279 taaccttttgaaaatggtccttgccgttagcttctgtcaacaaaaacgccactgtggctaacgga-gcacaggtggcaagttatgagttggcaca-tttg 842376  T
Q  111 atgagatggcatgagag 127  Q
    |||||||||||| ||||    
T  842377 atgagatggcataagag 842393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 126
Target Start/End: Complemental strand, 20773407 - 20773294
Alignment:
Q  11 taaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggcaaacgttg 110  Q
    |||||||||||||| |||||||||||||| |||| ||||| ||||| ||  | |||||||| ||| ||  | |||||||||  |||||||||| |  |||    
T  20773407 taaccttttgaaaatggtccttgccgtcaccttctgtcaacaaaaatgccattgtggctaatgga-gcacaggtggcaggtcatgagttggcaca-tttg 20773310  T
Q  111 atgagatggcatgaga 126  Q
    ||||||||||||||||    
T  20773309 atgagatggcatgaga 20773294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 30321131 - 30321064
Alignment:
Q  10 ataaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggagg 77  Q
    ||||| ||||||||||||||||||||||||||||| || || |||||| |  | ||||||||||||||    
T  30321131 ataacattttgaaaaaggtccttgccgtcagcttctgttaacaaaaacaccattgtggctaacggagg 30321064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 14 - 231
Target Start/End: Original strand, 27524363 - 27524602
Alignment:
Q  14 ccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggcaaacgttgatg 113  Q
    ||||||| |||  |||| ||||||||| ||  ||||| |||||||||||||||| ||||||||||   |||||||||||||||||||||||| |||||||    
T  27524363 ccttttggaaatcgtccctgccgtcaggttttgtcaacaaaaacgctttggtgggtaacggaggcactcgtggcaggttctgagttggcaaaagttgatg 27524462  T
Q  114 agatggcatgag----------------------agggactaaaaccaaaaacgaaaattgacatagggatgaatttnnnnnnngtaaacatcaaatttt 191  Q
    ||||||||||||                      |||||||||||||||||||  ||||| ||||||||||||| ||       ||||||||||||||||    
T  27524463 agatggcatgagagatgataagtagtgttagtacagggactaaaaccaaaaacacaaatttacatagggatgaaatttaaaaacgtaaacatcaaatttt 27524562  T
Q  192 gaattttaaaaatcaaactttccatcttctgcctctcact 231  Q
    |||||||||||| ||||||||||||||||| |||||||||    
T  27524563 gaattttaaaaaccaaactttccatcttcttcctctcact 27524602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 42300538 - 42300660
Alignment:
Q  3 tattttgataaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggc 102  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||  |||||||||||||| ||  ||||||||| |  |||||||||    
T  42300538 tattttgctaaccttttggaaaaggtccttgccgtcagcttccgtcaacaaaaacgccatggtggctaacgga-gcacacgtggcagttcatgagttggc 42300636  T
Q  103 aaacgttgatgagatggcatgagag 127  Q
    ||| ||||||||||||| |||||||    
T  42300637 aaa-gttgatgagatggaatgagag 42300660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 236
Target Start/End: Complemental strand, 28253467 - 28253354
Alignment:
Q  124 agagggactaaaaccaaaaacgaaaattgacatagggatgaatttnnnnnnng-taaacatcaaattttgaattttaaaaatcaaactttccatcttctg 222  Q
    ||||||||||||| |||||||| ||||| ||||||||||||| ||       | ||||||||||||||||||||||||||| |||||||| ||||||||     
T  28253467 agagggactaaaatcaaaaacgtaaatttacatagggatgaaattaaaaaaaggtaaacatcaaattttgaattttaaaaaccaaacttttcatcttctt 28253368  T
Q  223 cctctcactattct 236  Q
    ||| ||||||||||    
T  28253367 cctgtcactattct 28253354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 132 - 236
Target Start/End: Complemental strand, 37402474 - 37402370
Alignment:
Q  132 taaaaccaaaaacgaaaattgacatagggatgaatttnnnnnnngtaaacatcaaattttgaattttaaaaatcaaactttccatcttctgcctctcact 231  Q
    |||||||||||| | ||||| ||||||||||||| ||       ||||| |||||||||||||||||||||| |||||| |||||||||| |||||||||    
T  37402474 taaaaccaaaaatgcaaatttacatagggatgaaattaaaaaacgtaaaaatcaaattttgaattttaaaaaccaaactgtccatcttcttcctctcact 37402375  T
Q  232 attct 236  Q
    |||||    
T  37402374 attct 37402370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 127
Target Start/End: Original strand, 52793789 - 52793911
Alignment:
Q  3 tattttgataaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggc 102  Q
    ||||||| |||| ||||| |||||||||||||| |||||||||||||| |||||||   |||||| |||| || ||  ||||||||| | ||||||||||    
T  52793789 tattttgctaacattttggaaaaggtccttgccttcagcttccgtcaacaaaaacgtcatggtggttaac-gaagcacacgtggcagttcctgagttggc 52793887  T
Q  103 aaacgttgatgagatggcatgagag 127  Q
    ||| ||||||||||||| |||||||    
T  52793888 aaa-gttgatgagatggaatgagag 52793911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 28253599 - 28253486
Alignment:
Q  14 ccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggcaaacgttgatg 113  Q
    |||||||||||  ||||  |||||||| ||||||||| |||||||||||||||| ||||||||||   | || || ||| ||||||||||||  ||| ||    
T  28253599 ccttttgaaaatcgtcccagccgtcagattccgtcaacaaaaacgctttggtggataacggaggcacgcatgacatgttatgagttggcaaaatttgctg 28253500  T
Q  114 agatggcatgagag 127  Q
    ||||||||||||||    
T  28253499 agatggcatgagag 28253486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 28252183 - 28252239
Alignment:
Q  180 acatcaaattttgaattttaaaaatcaaactttccatcttctgcctctcactattct 236  Q
    |||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||    
T  28252183 acatcaaattttgaattttaaaaaccaaattttccatcttcttcctctcactattct 28252239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 9627555 - 9627500
Alignment:
Q  3 tattttgataaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacg 58  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||    
T  9627555 tattttgctaaccttttgaaaaaggtccttgccgtcagctttcgtcaacaaaaacg 9627500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 127
Target Start/End: Original strand, 28252030 - 28252139
Alignment:
Q  17 tttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggcaaacgttgatgaga 116  Q
    ||||||||  |||| ||||||||| ||||||||| |||||| ||||| ||| ||||||||||  |||||||||||| | ||||||||||  ||| |||||    
T  28252030 tttgaaaatcgtccctgccgtcaggttccgtcaacaaaaacactttg-tgggtaacggaggcacacgtggcaggttataagttggcaaaatttgctgaga 28252128  T
Q  117 tggcatgagag 127  Q
    ||||| |||||    
T  28252129 tggcaagagag 28252139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 236
Target Start/End: Original strand, 37401229 - 37401340
Alignment:
Q  126 agggactaaaaccaaaaacga-aaattgacatagggatgaatttnnnnnnngtaaacatcaaattttgaattttaaaaatcaaactttccatcttctgcc 224  Q
    ||||||||||||||||||  | ||||| ||||||||||||| ||       |||||||||||||||||| ||||||||| |||||||| |||||||| ||    
T  37401229 agggactaaaaccaaaaaacacaaatttacatagggatgaagttaaaaaaggtaaacatcaaattttgatttttaaaaaccaaacttttcatcttcttcc 37401328  T
Q  225 tctcactattct 236  Q
    | ||||| ||||    
T  37401329 tgtcactgttct 37401340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 9419653 - 9419556
Alignment:
Q  124 agagggactaaaaccaaaaacgaaaattgacatagggatgaatttnnnnnnngtaaacatcaaattttgaattttaaaaatcaaactttccatcttct 221  Q
    ||||||| |||||||||||||||| ||| ||||||||||||| ||       |||| |||||||||||||| |||||||| ||| ||||||| |||||    
T  9419653 agagggaataaaaccaaaaacgaatatttacatagggatgaaattaaaaaacgtaatcatcaaattttgaaatttaaaaaccaatctttccaccttct 9419556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 8322612 - 8322679
Alignment:
Q  10 ataaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggagg 77  Q
    ||||| ||||||||||||||||||||||||||||| || || ||||||||  | ||||||||||||||    
T  8322612 ataacattttgaaaaaggtccttgccgtcagcttctgttaacaaaaacgccattgtggctaacggagg 8322679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 26734522 - 26734585
Alignment:
Q  12 aaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacgga 75  Q
    |||||||||||||  |||||||||||||||||| ||||| ||||||||  ||||||||||||||    
T  26734522 aaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacgga 26734585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 31810082 - 31810149
Alignment:
Q  10 ataaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggagg 77  Q
    ||||| ||||||||||||||||||||||||||||| || || ||||||||  | ||||||||||||||    
T  31810082 ataacattttgaaaaaggtccttgccgtcagcttctgttaacaaaaacgccattgtggctaacggagg 31810149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 9626563 - 9626628
Alignment:
Q  11 taaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggag 76  Q
    |||||||||||||| |||| |||||||||||||| ||||| ||||||||| | |||||||| ||||    
T  9626563 taaccttttgaaaacggtcattgccgtcagcttctgtcaacaaaaacgctattgtggctaatggag 9626628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 8323406 - 8323339
Alignment:
Q  10 ataaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggagg 77  Q
    ||||| ||||||||||||||||| ||||||||||| || || ||||||||  | ||||||||||||||    
T  8323406 ataacattttgaaaaaggtccttaccgtcagcttctgttaacaaaaacgccattgtggctaacggagg 8323339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 31815737 - 31815670
Alignment:
Q  10 ataaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggagg 77  Q
    ||||| ||||||||||||||||||||||||||||| || || ||||||||    ||||||||||||||    
T  31815737 ataacattttgaaaaaggtccttgccgtcagcttctgttaacaaaaacgccactgtggctaacggagg 31815670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 42301581 - 42301469
Alignment:
Q  13 accttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggcaaacgttgat 112  Q
    |||||||||||| ||||||| || |||||||| ||||| ||||||||  | |||||||||||| ||  | |||||||||  ||| |||||| |  |||||    
T  42301581 accttttgaaaatggtccttaccatcagcttctgtcaacaaaaacgccattgtggctaacgga-gcacaggtggcaggtcatgacttggcaca-tttgat 42301484  T
Q  113 gagatggcatgagag 127  Q
    |||||||||||||||    
T  42301483 gagatggcatgagag 42301469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 158
Target Start/End: Original strand, 43882249 - 43882283
Alignment:
Q  124 agagggactaaaaccaaaaacgaaaattgacatag 158  Q
    |||||||||||||||||||||||||||| ||||||    
T  43882249 agagggactaaaaccaaaaacgaaaatttacatag 43882283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 11429486 - 11429538
Alignment:
Q  176 gtaaacatcaaattttgaattttaaaaatcaaactttccatcttctgcctctc 228  Q
    ||||||||||| |||||||||||||||| ||  |||||| |||||| ||||||    
T  11429486 gtaaacatcaatttttgaattttaaaaaccactctttccttcttcttcctctc 11429538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 37963367 - 37963481
Alignment:
Q  11 taaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggcaaacgttg 110  Q
    ||||||||||| ||  |||||||||||||| ||||||||| ||||||| |||| ||| ||||||||||   ||||||||||| |||||||||||| ||||    
T  37963367 taaccttttgataatcgtccttgccgtcaggttccgtcaacaaaaacgttttg-tgggtaacggaggcacgcgtggcaggttttgagttggcaaaagttg 37963465  T
Q  111 atgagatggcatgaga 126  Q
    ||||| ||||||||||    
T  37963466 atgaggtggcatgaga 37963481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 227
Target Start/End: Complemental strand, 37964478 - 37964378
Alignment:
Q  126 agggactaaaaccaaaaacgaaaattgacatagggatgaatttnnnnnnngtaaacatcaaattttgaattttaaaaatcaaactttccatcttctgcct 225  Q
    |||||||||||||||||||||||||| |||||||||||||  |       ||| |||| ||||||||||||||||||| ||||||||||||||||| |||    
T  37964478 agggactaaaaccaaaaacgaaaatttacatagggatgaaaataaaaac-gtagacattaaattttgaattttaaaaaccaaactttccatcttcttcct 37964380  T
Q  226 ct 227  Q
    ||    
T  37964379 ct 37964378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 358071 - 358185
Alignment:
Q  11 taaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggcaaacgttg 110  Q
    |||||||||||||| ||||||||||||||||||| ||||| ||||||||    |||||||||||| ||  | |||||| ||| |||||||||| |  |||    
T  358071 taaccttttgaaaatggtccttgccgtcagcttctgtcaacaaaaacgccactgtggctaacgga-gcacaggtggcaagttatgagttggcaca-tttg 358168  T
Q  111 atgagatggcatgagag 127  Q
    |||||||||||||||||    
T  358169 atgagatggcatgagag 358185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 127
Target Start/End: Complemental strand, 27411190 - 27411091
Alignment:
Q  27 gtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggcaaacgttgatgagatggcatgaga 126  Q
    |||| ||||||||| |||| |||| |||||||||||  ||| ||||||||||   |||||||||||||||||||||||| ||||||||  ||||||||||    
T  27411190 gtccctgccgtcaggttccatcaacaaaaacgctttt-tgggtaacggaggcacgcgtggcaggttctgagttggcaaaagttgatgaagtggcatgaga 27411092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 37964615 - 37964499
Alignment:
Q  11 taaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggcaaacgttg 110  Q
    |||||||||| |||  |||| ||||||||| ||||||||| |||||||||||  ||| |||| |||||    |||||| |||||||||||||||| ||||    
T  37964615 taaccttttggaaatcgtccctgccgtcaggttccgtcaacaaaaacgcttttctgggtaacagaggcacgtgtggcatgttctgagttggcaaaagttg 37964516  T
Q  111 atgagatggcatgagag 127  Q
     |||| |||||||||||    
T  37964515 ctgaggtggcatgagag 37964499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 359278 - 359215
Alignment:
Q  12 aaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacgga 75  Q
    |||||||||||||  |||||||||||||||||| ||||| ||||||||  ||||||||||||||    
T  359278 aaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacgga 359215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 21143994 - 21143880
Alignment:
Q  11 taaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggcaaacgttg 110  Q
    |||| |||||||||  ||||||| |||||||||| ||||| |||||||   |||||||||||||| ||  ||||||||| || |||||||||| |  ||     
T  21143994 taactttttgaaaatagtccttgtcgtcagcttctgtcaacaaaaacgtcatggtggctaacgga-gcacacgtggcagtttatgagttggcaca-ttta 21143897  T
Q  111 atgagatggcatgagag 127  Q
    |||||||||||||||||    
T  21143896 atgagatggcatgagag 21143880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 27409855 - 27409971
Alignment:
Q  11 taaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggcaaacgttg 110  Q
    |||||||||| |||  |||  |||||| || ||||||||| ||||||||||| |||| |||  |||||    |||||| |||||||||||||||| ||||    
T  27409855 taaccttttggaaatcgtctctgccgttaggttccgtcaacaaaaacgcttttgtgggtaatagaggcacgtgtggcatgttctgagttggcaaaagttg 27409954  T
Q  111 atgagatggcatgagag 127  Q
     |||| |||||||||||    
T  27409955 ctgaggtggcatgagag 27409971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 227
Target Start/End: Original strand, 27409992 - 27410093
Alignment:
Q  126 agggactaaaaccaaaaacgaaaattgacatagggatgaatttnnnnnnngtaaacatcaaattttgaattttaaaaatcaaactttccatcttctgcct 225  Q
    ||||||| |||||||||||||||||| |||||||||||||  |        || |||| ||||||||||||||||||| |||| ||| |||||||| |||    
T  27409992 agggacttaaaccaaaaacgaaaatttacatagggatgaaaataaataacatagacattaaattttgaattttaaaaaccaaatttttcatcttcttcct 27410091  T
Q  226 ct 227  Q
    ||    
T  27410092 ct 27410093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 36900009 - 36900091
Alignment:
Q  28 tccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggcaaacgttg 110  Q
    ||||||||||||| |||||| || ||||| || ||||||| |||||||||   ||||||||| ||||| ||||||||| ||||    
T  36900009 tccttgccgtcagattccgttaacaaaaaagcattggtggataacggaggtacacgtggcagtttctgggttggcaaaagttg 36900091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 37963554 - 37963604
Alignment:
Q  177 taaacatcaaattttgaattttaaaaatcaaactttccatcttctgcctct 227  Q
    |||||| |||||||||||||||||||| |||| |||||||||||| |||||    
T  37963554 taaacagcaaattttgaattttaaaaaccaaattttccatcttcttcctct 37963604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 110
Target Start/End: Original strand, 17706279 - 17706357
Alignment:
Q  32 tgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggcaaacgttg 110  Q
    ||||||||| ||||||||| ||||| || | | ||| |||||||| |  ||||||||| ||||||||||||||| ||||    
T  17706279 tgccgtcaggttccgtcaacaaaaaagcatggctgggtaacggagacacacgtggcagtttctgagttggcaaaagttg 17706357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 132 - 236
Target Start/End: Original strand, 5602 - 5706
Alignment:
Q  132 taaaaccaaaaacgaaaattgacatagggatgaatttnnnnnnngtaaacatcaaattttgaattttaaaaatcaaactttccatcttctgcctctcact 231  Q
    |||||||||||| | ||||| ||||||||||||| ||       ||||| |||||||||||||||||||||| |||||| |||||||||| |||||||||    
T  5602 taaaaccaaaaatgcaaatttacatagggatgaaattaaaaaacgtaaaaatcaaattttgaattttaaaaaccaaactgtccatcttcttcctctcact 5701  T
Q  232 attct 236  Q
    |||||    
T  5702 attct 5706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 6847 - 6736
Alignment:
Q  126 agggactaaaaccaaaaacga-aaattgacatagggatgaatttnnnnnnngtaaacatcaaattttgaattttaaaaatcaaactttccatcttctgcc 224  Q
    ||||||||||||||||||  | ||||| ||||||||||||| ||       |||||||||||||||||| ||||||||| |||||||| |||||||| ||    
T  6847 agggactaaaaccaaaaaacacaaatttacatagggatgaagttaaaaaaggtaaacatcaaattttgatttttaaaaaccaaacttttcatcttcttcc 6748  T
Q  225 tctcactattct 236  Q
    | ||||| ||||    
T  6747 tgtcactgttct 6736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 13373861 - 13373974
Alignment:
Q  12 aaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggcaaacgttga 111  Q
    |||||||||||||  |||||||||||||||||| ||||| ||||||||  ||||||||||| |||  | ||||||||| |  |||||||||| |  ||||    
T  13373861 aaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaaccgagtac-acgtggcagttcatgagttggcaca-tttga 13373958  T
Q  112 tgagatggcatgagag 127  Q
    ||||||||||||||||    
T  13373959 tgagatggcatgagag 13373974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 9671053 - 9671167
Alignment:
Q  11 taaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggcaaacgttg 110  Q
    ||||||||||||||  ||| ||| ||||| |||| |||||  |||||||  |||||||||||||| ||  ||||||||| |  |||||||||| |  |||    
T  9671053 taaccttttgaaaatagtctttgtcgtcaacttctgtcaagtaaaacgccatggtggctaacgga-gcacacgtggcagttcatgagttggcaca-tttg 9671150  T
Q  111 atgagatggcatgagag 127  Q
    |||||||||||||||||    
T  9671151 atgagatggcatgagag 9671167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 13375285 - 13375220
Alignment:
Q  11 taaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggag 76  Q
    |||||||| ||||| |||| ||| |||||||||| ||||| ||||||||  | |||||||||||||    
T  13375285 taacctttggaaaatggtcattgtcgtcagcttctgtcaacaaaaacgccattgtggctaacggag 13375220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 76
Target Start/End: Complemental strand, 13214 - 13149
Alignment:
Q  11 taaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggag 76  Q
    ||||||||||||||  |||||||||||||||||| ||||| ||||||||  |||||||||||||||    
T  13214 taaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacggag 13149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 76
Target Start/End: Complemental strand, 55019331 - 55019258
Alignment:
Q  3 tattttgataaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggag 76  Q
    |||||||||||||||||  |||||||||||||||||| |||||||||| |||||| |  |||||||| ||||||    
T  55019331 tattttgataaccttttagaaaaggtccttgccgtcaacttccgtcaacaaaaacaccatggtggcttacggag 55019258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 4906222 - 4906336
Alignment:
Q  11 taaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggcaaacgttg 110  Q
    |||||||||||||| |||||||||||| |||||| ||||| ||||||||    |||||||||||| ||  | |||||| ||| |||||||||| |  |||    
T  4906222 taaccttttgaaaatggtccttgccgttagcttctgtcaacaaaaacgccactgtggctaacgga-gcacaggtggcaagttatgagttggcaca-tttg 4906319  T
Q  111 atgagatggcatgagag 127  Q
    |||||||||||||||||    
T  4906320 atgagatggcatgagag 4906336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 4932091 - 4932205
Alignment:
Q  11 taaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggcaaacgttg 110  Q
    |||||||||||||| |||||||||||| |||||| ||||| ||||||||    |||||||||||| ||  | |||||| ||| |||||||||| |  |||    
T  4932091 taaccttttgaaaatggtccttgccgttagcttctgtcaacaaaaacgccactgtggctaacgga-gcacaggtggcaagttatgagttggcaca-tttg 4932188  T
Q  111 atgagatggcatgagag 127  Q
    |||||||||||||||||    
T  4932189 atgagatggcatgagag 4932205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 7108420 - 7108306
Alignment:
Q  11 taaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggcaaacgttg 110  Q
    ||||||||||||||  |||||||||||||||||| ||||| ||||| |   |||||||||||||| ||  ||||||||| |  |||||||||| |  |||    
T  7108420 taaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaatgtcatggtggctaacgga-gcacacgtggcagttcatgagttggcaca-tttg 7108323  T
Q  111 atgagatggcatgagag 127  Q
    |||||||||||||||||    
T  7108322 atgagatggcatgagag 7108306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 29757573 - 29757459
Alignment:
Q  11 taaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggcaaacgttg 110  Q
    |||||||||||||| |||||||||||| |||||| ||||| ||||||||    |||||||||||| ||  | |||||| ||| |||||||||| |  |||    
T  29757573 taaccttttgaaaatggtccttgccgttagcttctgtcaacaaaaacgccactgtggctaacgga-gcacaggtggcaagttatgagttggcaca-tttg 29757476  T
Q  111 atgagatggcatgagag 127  Q
    |||||||||||||||||    
T  29757475 atgagatggcatgagag 29757459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 38158604 - 38158536
Alignment:
Q  3 tattttgataaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaa 71  Q
    ||||| |||||||||||| |||||||||||||||||| ||| |||||| |||||| || ||||||||||    
T  38158604 tatttcgataaccttttggaaaaggtccttgccgtcaactttcgtcaacaaaaacactatggtggctaa 38158536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 4907426 - 4907363
Alignment:
Q  12 aaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacgga 75  Q
    |||||||||||||  |||||||||||||||||| ||||| ||||||||  ||||||||||||||    
T  4907426 aaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacgga 4907363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 4933295 - 4933232
Alignment:
Q  12 aaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacgga 75  Q
    |||||||||||||  |||||||||||||||||| ||||| ||||||||  ||||||||||||||    
T  4933295 aaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacgga 4933232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 29756366 - 29756429
Alignment:
Q  12 aaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacgga 75  Q
    |||||||||||||  |||||||||||||||||| ||||| ||||||||  ||||||||||||||    
T  29756366 aaccttttgaaaatagtccttgccgtcagcttctgtcaacaaaaacgccatggtggctaacgga 29756429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 23703828 - 23703672
Alignment:
Q  11 taaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggaggcctacgtggcaggttctgagttggcaaacgttg 110  Q
    ||||||||||||||   |||||| |||||||||| ||||| ||||||||  | |||| ||||||| ||  ||||||||| |  |||||||||| |  |||    
T  23703828 taaccttttgaaaatattccttgtcgtcagcttctgtcaacaaaaacgccatagtggttaacgga-gcacacgtggcagttcatgagttggcaca-tttg 23703731  T
Q  111 atgagatggcatgagag----ggactaaaaccaaaaacgaaaattgacatagggatgaa 165  Q
    |||||||||||||||||      ||||||| |||||||| ||||||||| |||||||||    
T  23703730 atgagatggcatgagagatgataactaaaatcaaaaacgtaaattgacacagggatgaa 23703672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 2671737 - 2671774
Alignment:
Q  124 agagggactaaaaccaaaaacgaaaattgacataggga 161  Q
    |||||||||||||||||||||| ||||| |||||||||    
T  2671737 agagggactaaaaccaaaaacgcaaatttacataggga 2671774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 22674245 - 22674310
Alignment:
Q  11 taaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggag 76  Q
    |||||||||||||| ||||||||| || |||||| ||||| ||||||||    |||||||||||||    
T  22674245 taaccttttgaaaatggtccttgctgttagcttctgtcaacaaaaacgccactgtggctaacggag 22674310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 35786643 - 35786595
Alignment:
Q  11 taaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgc 59  Q
    |||||||||||||| ||||||||||||  ||||| ||||| ||||||||    
T  35786643 taaccttttgaaaatggtccttgccgttggcttctgtcaacaaaaacgc 35786595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 4225 - 4158
Alignment:
Q  10 ataaccttttgaaaaaggtccttgccgtcagcttccgtcaataaaaacgctttggtggctaacggagg 77  Q
    ||||| ||||||||||||||||||||||||||||| || || ||||||||  | ||||||||||||||    
T  4225 ataacattttgaaaaaggtccttgccgtcagcttctgttaacaaaaacgccattgtggctaacggagg 4158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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