View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985_high_24 (Length: 238)
Name: NF9985_high_24
Description: NF9985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 28137010 - 28136787
Alignment:
| Q |
1 |
ccttcgaatatggaaccttttgcctttaattttctccgtctcttcttgtttttgtgtatttcagttgcgttcacattcatgtaagtgttcaattccagct |
100 |
Q |
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| T |
28137010 |
ccttcgaatatggaaccttttgcctttaattttctctttctcttcttgtttttgtgtattgcagttgcgttcacattcatgtaagtgttcaattccagct |
28136911 |
T |
|
| Q |
101 |
atgattttagtattgtt-ttttgtgattaaatcaagtattagttgattgaattggaatttatatgtttgttttagtttttaggttgaaatcaatttgaaa |
199 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28136910 |
atgattttagtattgtttttttgtgattaaatcaagtattagttgattgaattggaatttatatgtttgttttagtttttaggttgaaatcaatttgaaa |
28136811 |
T |
|
| Q |
200 |
tttgaatcataaatgtgttattgg |
223 |
Q |
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||||||| |||||||||||||||| |
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| T |
28136810 |
tttgaattataaatgtgttattgg |
28136787 |
T |
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