View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9985_high_5 (Length: 447)
Name: NF9985_high_5
Description: NF9985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 45219164 - 45219591
Alignment:
| Q |
1 |
aaaattctaggacgttgattccttgcaataaaatctcagtcattgatttaatatcaatcgctcagattatacaatcagtaaattaattttaaacaatctc |
100 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
45219164 |
aaaattctaggaccttgattccctgcaataaaatctcagccattgatttaatatcaatcactcagattatacaatcagtaaaataattttaaacaatctc |
45219263 |
T |
|
| Q |
101 |
gactattgatttaaatcgtacagtcgagatctttaactgcatgaaacagtgacagcagccaaacatatttgctaatcatgtagtaatacaagtttagatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45219264 |
gactattgatttaaatcgtacagtcgagatctttaactgcatgaaacagtgactgcagccaaacatatttgctaatcatgtagtaatacaagtttagatc |
45219363 |
T |
|
| Q |
201 |
aaaataaggtcccccatttcctcactttaactttcactttccctcaaccaatacaaaatgtaggacacaagcgactgaggcctaaggacttgcattgaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45219364 |
aaaataaggtcccccatttcctcactttaactttcactttccctcaaccaatacaaaatgtaggacacaagcgactgaggcctaaggacttgcattgaaa |
45219463 |
T |
|
| Q |
301 |
atcacatactttggtacctagaaagaaattttctctgacattgatggacaagtaataactttttgaaattgattattcctcctagatcatgttcaagttt |
400 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45219464 |
atcacatactttggtacctagaaataaattttctctgacattgatggacaagtaataactttttgaaattgattattcctcctagatcatgttcaagttt |
45219563 |
T |
|
| Q |
401 |
ggcttgggttcaaaatccttgacaaaaa |
428 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
45219564 |
ggcttgggttcaaaatccttgacaaaaa |
45219591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 30286809 - 30286760
Alignment:
| Q |
62 |
tcagattatacaatcagtaaattaattttaaacaatctcgactattgatt |
111 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||| || ||| ||||||| |
|
|
| T |
30286809 |
tcagattacacaatcagtaaattagttttaaacaaccttgaccattgatt |
30286760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 113
Target Start/End: Original strand, 5985338 - 5985366
Alignment:
| Q |
85 |
aattttaaacaatctcgactattgattta |
113 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
5985338 |
aattttaaacaatctcgactattgattta |
5985366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University