View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985_high_6 (Length: 431)
Name: NF9985_high_6
Description: NF9985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-137; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 15 - 413
Target Start/End: Complemental strand, 11195954 - 11195559
Alignment:
| Q |
15 |
agaagctgagaagtacaaagatgaagacaagaggtatatgaagaagctagaagcgagagatgtattagagaagtatgcatacaacatgaggaatgcgata |
114 |
Q |
| |
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| T |
11195954 |
agaagctgagaagtacaaagatgaagacaagaggtatatgaagaagctagaagcgagagatgtattagagaagtatgcatacaacatgaggaatgcgata |
11195855 |
T |
|
| Q |
115 |
aatgataaggatattagtttgaagctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttggtcttaaggtggctcgatgttaataacgtgg |
214 |
Q |
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||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||| |
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| T |
11195854 |
aatgataaggacattagtttgatgctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttggtcttcatgtggctcgatgt---taacgtgg |
11195758 |
T |
|
| Q |
215 |
ttgcggaacaacaagactttgattattatacgagcattctttcaagtgtattcaatgcaattatggtgaagaaaataaaggatgaggtgcatggtctgca |
314 |
Q |
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||||||||||| || | ||||| ||||||||||||||||||||||||||||| ||||| |||| |||||||| ||||| |||||| ||||||| |||| |
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| T |
11195757 |
ttgcggaacaagaacaatttgagtattatacgagcattctttcaagtgtatttgatgcagttatagtgaagaagataaatgatgagaggcatggtgtgca |
11195658 |
T |
|
| Q |
315 |
agaaggtactacggttagttatgcagtaaacnnnnnnngaaatcgttggatacaaactttactaaaatattctttcattatagtgtatgcagctgcaac |
413 |
Q |
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||| |||| || |||| | |||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11195657 |
agagggtattatggttgggaatgcagtaaagaataaaaagaatcattggttacaaactttactaaaatattctttcattatagtgtacgcagctgcaac |
11195559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 15 - 413
Target Start/End: Complemental strand, 11155507 - 11155112
Alignment:
| Q |
15 |
agaagctgagaagtacaaagatgaagacaagaggtatatgaagaagctagaagcgagagatgtattagagaagtatgcatacaacatgaggaatgcgata |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||| |||||||||||||||||||||||| ||| |
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| T |
11155507 |
agaagctgagaagtacaaagatgaagacaagaggtatatgaagaaggtagaagcgagagttgtactagagacgtatgcatacaacatgaggaatgctata |
11155408 |
T |
|
| Q |
115 |
aatgataaggatattagtttgaagctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttggtcttaaggtggctcgatgttaataacgtgg |
214 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||| | |||||||||||| ||||||| |
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| T |
11155407 |
aatgataaggatattagtttgatgctttcgtcaaaagaaaaggaaaagatcaataatgcacttgatttggtctttacgtggctcgatgt---taacgtga |
11155311 |
T |
|
| Q |
215 |
ttgcggaacaacaagactttgattattatacgagcattctttcaagtgtattcaatgcaattatggtgaagaaaataaaggatgaggtgcatggtctgca |
314 |
Q |
| |
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| T |
11155310 |
ttgcggaacaagaacaatttgagtattatacgagcattctttcaagtgtatttgatgcagttatagtgaagaagataaatgatgagaggcatggtgtgca |
11155211 |
T |
|
| Q |
315 |
agaaggtactacggttagttatgcagtaaacnnnnnnngaaatcgttggatacaaactttactaaaatattctttcattatagtgtatgcagctgcaac |
413 |
Q |
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||| |||| || |||| | |||||||||| |||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11155210 |
agagggtattatggttgggaatgcagtaaagaataaaaagaatcattggaaacaaactttactaaaatattctttcattatagtccatgcagctgcaac |
11155112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 3 - 330
Target Start/End: Complemental strand, 11208620 - 11208296
Alignment:
| Q |
3 |
gaggaggagcagagaagctgagaagtacaaagatgaagacaagaggtatatgaagaagctagaagcgagagatgtattagagaagtatgcatacaacatg |
102 |
Q |
| |
|
||||| || ||| ||||||||||| |||||||||||||||| |||| ||| ||||||| | ||| ||||| ||| | |||||||||| |||||||| ||| |
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| T |
11208620 |
gaggatgatcagtgaagctgagaaatacaaagatgaagacatgaggcataggaagaaggttgaatcgagaaatgcactagagaagtacgcatacaatatg |
11208521 |
T |
|
| Q |
103 |
aggaatgcgataaatgataaggatattagtttgaagctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttggtcttaaggtggctcgatg |
202 |
Q |
| |
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||| || | ||||||||| || |||| | |||||||||||||||||||||||||||||||||||| ||| ||||||||||||| | |||||| || | |
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| T |
11208520 |
agggattccataaatgatccagaagttagctcgaagctttcgtcaaaagaaaaggaaaagatcaataacgcagttgatttggtcttcatgtggcttgacg |
11208421 |
T |
|
| Q |
203 |
ttaataacgtggttgcggaacaacaagactttgattattatacgagcattctttcaagtgtattcaatgcaattatggtgaagaaaataaaggatgaggt |
302 |
Q |
| |
|
|||||| ||| | ||||||||||| ||||| | ||||| |||||||||||||||||| || || ||||||| |||||| ||||||||||||| |
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| T |
11208420 |
ctaataa---ggtagtagaacaacaagattttgagtgttataggagcattctttcaagtgtgtttgatccaattattttgaagatgataaaggatgaggg |
11208324 |
T |
|
| Q |
303 |
gcatggtctgcaagaaggtactacggtt |
330 |
Q |
| |
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||||||| || |||||||||||| |||| |
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| T |
11208323 |
gcatggtgtggaagaaggtactatggtt |
11208296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 13 - 330
Target Start/End: Complemental strand, 11169788 - 11169474
Alignment:
| Q |
13 |
agagaagctgagaagtacaaagatgaagacaagaggtatatgaagaagctagaagcgagagatgtattagagaagtatgcatacaacatgagg-aatgcg |
111 |
Q |
| |
|
||||||||||| || |||||||||||||||| |||| ||| ||||||| | ||||||||| ||| | |||||| ||| |||||||| |||||| ||| | |
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|
| T |
11169788 |
agagaagctgacaaatacaaagatgaagacatgaggcataggaagaaggttgaagcgagaaatgcactagagatgtacgcatacaatatgagggaattc- |
11169690 |
T |
|
| Q |
112 |
ataaatgataaggatattagtttgaagctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttggtcttaaggtggctcgatgttaataacg |
211 |
Q |
| |
|
||||||||| ||||||||| | |||| |||||||||||||||||| ||| |||||||| |||| |||||||||||| | |||||| || |||||| | |
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| T |
11169689 |
ataaatgatccggatattagctcgaagatttcgtcaaaagaaaaggcaaacatcaataacgcaactgatttggtctttaagtggcttgacgttaat---g |
11169593 |
T |
|
| Q |
212 |
tggttgcggaacaacaagactttgattattatacgagcattctttcaagtgtattcaatgcaattatggtgaagaaaataaaggatgaggtgcatggtct |
311 |
Q |
| |
|
||||||| ||||||||||| ||||| |||||| ||||||||||||||||| || || ||||| | | |||| ||||||||||||| ||| || | |
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| T |
11169592 |
tggttgcagaacaacaagattttgaacattatagtagcattctttcaagtgtgtttgatccaattgttataaagatgataaaggatgagggacattgtgt |
11169493 |
T |
|
| Q |
312 |
gcaagaaggtactacggtt |
330 |
Q |
| |
|
|||||||||||||| |||| |
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|
| T |
11169492 |
gcaagaaggtactatggtt |
11169474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 11275169 - 11274872
Alignment:
| Q |
16 |
gaagctgagaagtacaaagatgaagacaagaggtatatgaagaagctagaagcgagagatgtattagagaagtatgcatacaacatgaggaatgcgataa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||| ||| ||| | ||||||||| ||| | |||||||||| |||||||| |||||| || |||| |
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|
| T |
11275169 |
gaagctgagaagtacaaagatgaagacattaggcataggaaaaaggttgaagcgagaaatgcactagagaagtacgcatacaatatgagggatttcataa |
11275070 |
T |
|
| Q |
116 |
atgataaggatattagtttgaagctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttggtcttaaggtggctcgatgttaataacgtggt |
215 |
Q |
| |
|
||||| ||||||| | ||||||||| | ||||||||||||||| |||||||| |||| |||||||||||| | |||||| || |||||| ||||| |
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|
| T |
11275069 |
atgatcccgatattatctcgaagctttcattaaaagaaaaggaaaacatcaataatgcaactgatttggtctttaagtggcttgacgttaat---gtggt |
11274973 |
T |
|
| Q |
216 |
tgcggaacaacaagactttgattattatacgagcattctttcaagtgtattcaatgcaattatggtgaagaaaataaaggatgaggtgcatggtctgcaa |
315 |
Q |
| |
|
||| ||||||||||| ||||| | ||||| |||||||||||||||||| || || ||||| | | |||| ||||||||||||| |||||| ||||| |
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|
| T |
11274972 |
tgcagaacaacaagattttgaatgttataggagcattctttcaagtgtgtttgatccaattgttataaagatgataaaggatgagggacatggtgtgcaa |
11274873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 11165561 - 11165377
Alignment:
| Q |
13 |
agagaagctgagaagtacaaagatgaagacaagaggtatatgaagaagctagaagcgagagatgtattagagaagtatgcatacaacatgaggaatgcga |
112 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||| ||| ||||||| | ||||||||| ||| | |||||| ||| |||||||| |||||| || | | |
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|
| T |
11165561 |
agagaagctgagaaatacaaagatgaagacatgaggcataggaagaaggttgaagcgagaaatgcactagagaggtacgcatacaatatgagggattcca |
11165462 |
T |
|
| Q |
113 |
taaatgataaggatattagtttgaagctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttggtcttaaggtggct |
197 |
Q |
| |
|
|||||||| ||| |||| | ||||||||||||||||||||||||||| |||||||| ||| ||||||||||||| | |||||| |
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|
| T |
11165461 |
taaatgatccagatgttagctcgaagctttcgtcaaaagaaaaggaaaatatcaataacgcagttgatttggtctttaagtggct |
11165377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 83 - 263
Target Start/End: Original strand, 11242021 - 11242199
Alignment:
| Q |
83 |
agaagtatgcatacaacatgaggaatgcgataaatgataaggatattagtttgaagctttcgtcaaa--agaaaaggaaaagatcaataaagcaattgat |
180 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||| | | ||||||||||| ||| | ||||||||||||| |||||||||||| || |
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|
| T |
11242021 |
agaagtatgcatacaacataaggaatgccataaatgataaggatatttgctcgaagctttcgtaaaacgaaaaaaggaaaagattaataaagcaatt-at |
11242119 |
T |
|
| Q |
181 |
ttggtcttaaggtggctcgatgttaataacgtggttgcggaacaacaagactttgattattatacgagcattctttcaagtgt |
263 |
Q |
| |
|
|||||||| | ||||| ||||||||| ||||||| ||||||| ||| ||||| | ||||| |||||||||||||||||| |
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|
| T |
11242120 |
ttggtcttcacatggcttgatgttaat---gtggttgaagaacaacgagattttgaatgttataggagcattctttcaagtgt |
11242199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 11132225 - 11132051
Alignment:
| Q |
15 |
agaagctgagaagtacaaagatgaagacaagaggtatatgaagaagctagaagcgagagatgtattagagaagtatgcatacaacatgaggaatgcgata |
114 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||| ||||||| ||||| | ||| ||| ||| ||||||| |||||| |||||||||||||| ||| |
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|
| T |
11132225 |
agaagctgagaagtacaaggatgaagacaagatgtataggaagaaggtagaaacaagaaatgcattggagaagtgtgcatataacatgaggaatgccata |
11132126 |
T |
|
| Q |
115 |
aatgataaggatattagtttgaagctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttggtctta |
189 |
Q |
| |
|
|| |||||||| |||| |||||||||||| | |||| |||||| |||| |||| ||||||||| ||||||| |
|
|
| T |
11132125 |
aacgataaggagattatgatgaagctttcgttagaagacaaggaagtgatcgataacacaattgattcggtctta |
11132051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 87 - 318
Target Start/End: Original strand, 11315745 - 11315976
Alignment:
| Q |
87 |
gtatgcatacaacatgaggaatgcgataaatgataaggatattagtttgaagctttcgtcaaaagaaaaggaaaagatcaataaagcaattgatttggtc |
186 |
Q |
| |
|
|||||||||||| |||| | |||| || ||||||||||||||||| || | ||||| ||||||||||||| ||||||||||| | ||||||| |||| |
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|
| T |
11315745 |
gtatgcatacaagatgaaggatgccattaatgataaggatattagctttatgcttttgtcaaaagaaaagaaaaagatcaatgatgcaattggtttgact |
11315844 |
T |
|
| Q |
187 |
ttaaggtggctcgatgttaataacgtggttgcggaacaacaagactttgattattatacgagcattctttcaagtgtattcaatgcaattatggtgaaga |
286 |
Q |
| |
|
||| ||||| ||||||| | | || ||| ||||||| || |||| | ||| ||| || ||||||||||| || ||| |||||| ||||||| |
|
|
| T |
11315845 |
ttactctggcttcgtgttaatcatgaggatgcaaaacaacatgaaattgaggaacataggagaatgctttcaagtgtgtttgatggaattattgtgaaga |
11315944 |
T |
|
| Q |
287 |
aaataaaggatgaggtgcatggtctgcaagaa |
318 |
Q |
| |
|
| ||||||||||||| ||||||| |||||||| |
|
|
| T |
11315945 |
agataaaggatgaggagcatggtgtgcaagaa |
11315976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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