View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985_high_7 (Length: 424)
Name: NF9985_high_7
Description: NF9985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 7 - 408
Target Start/End: Original strand, 5678232 - 5678635
Alignment:
| Q |
7 |
gcagcacagagccactaccttatgtaaagtaaaggaagattctccaatttggacattgacatcacttggaatctcctgagaaaaaatcctataattaagc |
106 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5678232 |
gcagcaaagagtcactaccttatgtaaagtaaaggaagattcaccaatttggacattgacatcacttggaatctcctgagaaaaaatcctataattaagc |
5678331 |
T |
|
| Q |
107 |
aatacaactcattggtttcagttactaaaatccaacaaaagttagcaaacaagaacatgcacaagaaaagtgtcaagtacatttgacatatatatacata |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5678332 |
aatacaactcattggtttcagttactaaaatccaacaaaagttagcaaacaagaacatgcacaagaaaagtgtcaagtacatttgacatatatatacata |
5678431 |
T |
|
| Q |
207 |
aacat--nnnnnnntataccagtcacttgttcttttcatggcactagatagaagctcttgcttcttcacagacaagtcactagcagatgttgtagttttg |
304 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5678432 |
aacataaaaaaaaatataccagtcacttgttcttttcatggcactagatagaagctcttgcttcttcacagacaagtcactagcagatgttgtagttttg |
5678531 |
T |
|
| Q |
305 |
tctagaccacgatccaccatggcaagtacagaaagatttctacctcactataaatgaagcagaaaaagattaatgagtcagttatagtataggctcaagg |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5678532 |
tctagaccacgatccaccatggcaagtacagaaagatttctacctcactataaatgaagcagaaaaagattaatgagtcagttatagtataggctcaagg |
5678631 |
T |
|
| Q |
405 |
acct |
408 |
Q |
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|||| |
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| T |
5678632 |
acct |
5678635 |
T |
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