View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9985_low_1 (Length: 759)
Name: NF9985_low_1
Description: NF9985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 663; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 663; E-Value: 0
Query Start/End: Original strand, 16 - 744
Target Start/End: Complemental strand, 49166116 - 49165389
Alignment:
| Q |
16 |
acatcaagcacaacatcttccttgttggcaagcacaaaaacacatacatctccagcctgcaatttattttcttctacaaacagactccaaccttcaccca |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49166116 |
acatcaagcacaacatcttccttgttggcaagcacaaaaacacatacatctccagcctgcaatttattttcttctacaaacagactccaaccttcaccca |
49166017 |
T |
|
| Q |
116 |
actttgttgctggttcggatggataatacatcaattgtacaggccacaatttttcctcaaactgtaacattgcagtcttctttttgggacccaagtactt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49166016 |
actttgttgctggttcggatggataatacatcaattgtacaggccacaatttttcctcaaactgtaacattgcagtcttctttttgggacccaagtactt |
49165917 |
T |
|
| Q |
216 |
gctcgagaatgaatttcgtacacgctgcgtaaattagtgtttcttttacagttagtggggatatgtcaataactgcatactttctactagaattcatgac |
315 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
49165916 |
gctcgagaatgaatttcgtacacgctgcgcaaattagtgtttcttttacagttagtgagggtatgtcaataactgcatactttctactagaattcatgac |
49165817 |
T |
|
| Q |
316 |
atgaaataaatactactccggttttaagcataatcattagatatatgtatttggttcaaatatcataaatacatattccttactggtctgtaaacatccc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49165816 |
atgaaataaatactactccggttttaagcataatcattagatatatgtatttggttcaaatatcataaatacatattccttactggtctgtaaacatccc |
49165717 |
T |
|
| Q |
416 |
aatgacttgatctcaaattgatagtgaaatttggtttttccaaagtggatgtgaattgattggcttctttcttagcttcagaatttttgaaggagcatgg |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49165716 |
aatgacttgatctcaaattgatagtgaaatttggtttttccaaagtggatgtgaattgattggcttctttcttagcttcagaatttttgaaggagcatgg |
49165617 |
T |
|
| Q |
516 |
cctagtctgcagtgagtttctttgagtttccttcgttcctgaggtatgccaacaaaagtatataatcaatttacaaataagctatgtctatttgtaaaac |
615 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49165616 |
cctagcctgcagtgagtttctttgagtttccttcgttcctgaggtatgccaacaaaagtatataatcaatttacaaataagctatgtctatttgtaaaac |
49165517 |
T |
|
| Q |
616 |
tacaatagttgcannnnnnnncttgattctagtgttgtcaatcgtgagtcatnnnnnnntagaggattattcaagctgcattgtagtgccactaaacaac |
715 |
Q |
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| T |
49165516 |
tacaatagttgca-tttttttcttgattctagtgttgtcaatcgtgagtcataaaaaaatagaggattattcaagctgcattgtagtgccactaaacaac |
49165418 |
T |
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| Q |
716 |
attttgtattaaatagtgtatggtagaac |
744 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
49165417 |
attttgtattaaatagtgtatggtagaac |
49165389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 389 - 608
Target Start/End: Complemental strand, 43752148 - 43751932
Alignment:
| Q |
389 |
tattccttactggtctgtaaacatcccaatgacttgatctcaaattgatagtgaaatttggtttttccaaagtggatgtgaattgattggcttctttctt |
488 |
Q |
| |
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|||| ||||| ||| ||||||||||| |||||||||| ||| ||||||||||||| ||| |||| || |||||||| |||||||| | ||||||||| |
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| T |
43752148 |
tattgcttaccggtttgtaaacatccgcatgacttgatatcactttgatagtgaaatgtggatttttcagagtggatgcgaattgatctgattctttctt |
43752049 |
T |
|
| Q |
489 |
agcttcagaatttttgaaggagcatggcctagtctgcagtgagtttctttgagtttccttcgttcctgaggtatgccaacaaaagtatataatcaattta |
588 |
Q |
| |
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| |||||||| ||||||| ||||||| |||| || ||||| | |||||||| ||||| ||||| ||||||||||||||| | | || ||||||| |
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| T |
43752048 |
aacttcagaacttttgaaagagcatgaactagcatggagtgaat---tttgagttgccttctttcctatagtatgccaacaaaagcaaaaaaacaattta |
43751952 |
T |
|
| Q |
589 |
caaataagctatgtctattt |
608 |
Q |
| |
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||||||||||| ||||||| |
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| T |
43751951 |
caaataagctacatctattt |
43751932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 43752543 - 43752422
Alignment:
| Q |
17 |
catcaagcacaacatcttccttgttggcaagcacaaaaacacatacatctccagcctgcaatttattttcttctacaaacagactccaaccttcacccaa |
116 |
Q |
| |
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|||||| ||||| ||||||||| ||| | ||| |||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||| || ||| |
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| T |
43752543 |
catcaaacacaagatcttccttattgacgagctcaaaaacacatacatctccagcctccaatttattttcctctacaaacttactccaacctgtactcaa |
43752444 |
T |
|
| Q |
117 |
ctttgttgctggttcggatgga |
138 |
Q |
| |
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||| |||| |||||||||||| |
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| T |
43752443 |
cttggttgacggttcggatgga |
43752422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 277 - 376
Target Start/End: Complemental strand, 43752305 - 43752205
Alignment:
| Q |
277 |
tatgtcaataactgcatactttctactagaattcatgacatgaaataaatactactccggttttaagcataatcattagatatat-gtatttggttcaaa |
375 |
Q |
| |
|
||||||||||||||||| ||| || | ||| | ||||||||||| ||||||||||||| |||| || ||||| ||| ||||| || |||||||||||||| |
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| T |
43752305 |
tatgtcaataactgcatgcttgctccaagattgcatgacatgaattaaatactactccagtttcaaacataaccatgagataaatagtatttggttcaaa |
43752206 |
T |
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| Q |
376 |
t |
376 |
Q |
| |
|
| |
|
|
| T |
43752205 |
t |
43752205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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