View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9985_low_10 (Length: 359)
Name: NF9985_low_10
Description: NF9985
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9985_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 15 - 345
Target Start/End: Complemental strand, 9786769 - 9786439
Alignment:
| Q |
15 |
agacacatttctctttacaaagaaaaacaatggcaagcattaaggtagcatgtgttgttttgatgatgtgcatcattgttgcacctatggctgaagctgc |
114 |
Q |
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||||||||||||||||||||||||| | |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9786769 |
agacacatttctctttacaaagaaatataatggcaagcatgaaggtagcatgtgttcttttgatgatgtgcatcattgttgcacctatggctgaagctgc |
9786670 |
T |
|
| Q |
115 |
aatctcatgtggaacagtaactggtgctcttgctccatgcattggatatcttaaaggtggtgttggtccatctccagcatgctgtggtggagtcaagaga |
214 |
Q |
| |
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|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
9786669 |
aatcacatgtggaacagtaactggttctcttgctccatgcattggatatcttaaaggtggttctggtccatctgcagcatgctgtggtggagtcaagaga |
9786570 |
T |
|
| Q |
215 |
cttaacggtgccgccagtaccacgcctgaccgtcaggctgcttgcaactgcttgaaaaatgctgctggtgctattactggtttgaatcctaacatagctg |
314 |
Q |
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|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
9786569 |
cttaacagtgccgccactaccacgcctgaccgtcaggctgcttgcaactgcttgaaaagtgctgctggtgctatttctggtttgaatcctaacatagctg |
9786470 |
T |
|
| Q |
315 |
ctggtctccctggcaaatgtggtgttaacat |
345 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
9786469 |
ctggtctccctggcaaatgtggtgttaacat |
9786439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 34 - 345
Target Start/End: Complemental strand, 9812652 - 9812341
Alignment:
| Q |
34 |
aagaaaaacaatggcaagcattaaggtagcatgtgttgttttgatgatgtgcatcattgttgcacctatggctgaagctgcaatctcatgtggaacagta |
133 |
Q |
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||||||||||||||||| ||| ||| |||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
9812652 |
aagaaaaacaatggcaaacatgaagatagcatgtgttgttttgatgatgtgcatgattgttgcacctatggcagatgctgcaatctcatgtggaacagta |
9812553 |
T |
|
| Q |
134 |
actggtgctcttgctccatgcattggatatcttaaaggtggtgttggtccatctccagcatgctgtggtggagtcaagagacttaacggtgccgccagta |
233 |
Q |
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||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
9812552 |
actagtgctcttggtccatgcattggatatcttaaaggtggtcctggtccatctccagcatgctgtggtggagtcaagagacttaacggtgccgccgcca |
9812453 |
T |
|
| Q |
234 |
ccacgcctgaccgtcaggctgcttgcaactgcttgaaaaatgctgctggtgctattactggtttgaatcctaacatagctgctggtctccctggcaaatg |
333 |
Q |
| |
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|||| ||||||||||||||||| ||||||||||||||| | || |||||||||||| | ||||||||| | |||| ||| ||||||||||||||| |
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| T |
9812452 |
ccacacctgaccgtcaggctgcatgcaactgcttgaaacaagcagctggtgctatttcaggtttgaataccgctgcagcttctgctctccctggcaaatg |
9812353 |
T |
|
| Q |
334 |
tggtgttaacat |
345 |
Q |
| |
|
|||||||||||| |
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|
| T |
9812352 |
tggtgttaacat |
9812341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 38 - 345
Target Start/End: Original strand, 9831929 - 9832236
Alignment:
| Q |
38 |
aaaacaatggcaagcattaaggtagcatgtgttgttttgatgatgtgcatcattgttgcacctatggctgaagctgcaatctcatgtggaacagtaactg |
137 |
Q |
| |
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|||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
9831929 |
aaaaaaatggcaagcatgaaggtagcatgtgttgttttgatgatgtgcatgattgttgcacctatggcagatgctgcaatctcatgtggaacagtaacta |
9832028 |
T |
|
| Q |
138 |
gtgctcttgctccatgcattggatatcttaaaggtggtgttggtccatctccagcatgctgtggtggagtcaagagacttaacggtgccgccagtaccac |
237 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9832029 |
gtgctcttggtccatgcattggatatcttaaaggtggtcctggtccatctccagcatgctgtggtggagtcaagagacttaacggtgccgccgccaccac |
9832128 |
T |
|
| Q |
238 |
gcctgaccgtcaggctgcttgcaactgcttgaaaaatgctgctggtgctattactggtttgaatcctaacatagctgctggtctccctggcaaatgtggt |
337 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| | || |||||||||||| | ||||||||| | |||| ||| ||||||||||||||||||| |
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| T |
9832129 |
acctgaccgtcaggctgcatgcaactgcttgaaacaagcagctggtgctatttcaggtttgaatacagctgcagcttctgctctccctggcaaatgtggt |
9832228 |
T |
|
| Q |
338 |
gttaacat |
345 |
Q |
| |
|
|||||||| |
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|
| T |
9832229 |
gttaacat |
9832236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 148 - 342
Target Start/End: Complemental strand, 10137314 - 10137120
Alignment:
| Q |
148 |
tccatgcattggatatcttaaaggtggtgttggtccatctccagcatgctgtggtggagtcaagagacttaacggtgccgccagtaccacgcctgaccgt |
247 |
Q |
| |
|
|||||||||| |||||| |||||||| |||||||||| ||||||||||||||||||| |||| |||||| | |||||||| ||| |||| ||| |
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| T |
10137314 |
tccatgcattacttatcttcaaggtggtcctggtccatctgcagcatgctgtggtggagtgaagaaacttaatgctgccgccaacaccggccctgcccgc |
10137215 |
T |
|
| Q |
248 |
caggctgcttgcaactgcttgaaaaatgctgctggtgctattactggtttgaatcctaacatagctgctggtctccctggcaaatgtggtgttaa |
342 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| | ||| || |||||||| ||| |||||||| ||| |||||||||||||||||||| |
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| T |
10137214 |
aaggctgcttgcaactgcttgaaaagtgctgctggtaccattgctcgtttgaataacaaccaagctgctgctcttcctggcaaatgtggtgttaa |
10137120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 161 - 345
Target Start/End: Complemental strand, 10150787 - 10150603
Alignment:
| Q |
161 |
tatcttaaaggtggtgttggtccatctccagcatgctgtggtggagtcaagagacttaacggtgccgccagtaccacgcctgaccgtcaggctgcttgca |
260 |
Q |
| |
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|||||| |||||||| |||||||||| ||||||||||||||||||| |||| ||||||||||||||||| ||| || | ||| || ||||||||| |
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| T |
10150787 |
tatcttcaaggtggtcctggtccatctgcagcatgctgtggtggagtgaagaaacttaacggtgccgccaacaccggccccgcccgcaagactgcttgca |
10150688 |
T |
|
| Q |
261 |
actgcttgaaaaatgctgctggtgctattactggtttgaatcctaacatagctgctggtctccctggcaaatgtggtgttaacat |
345 |
Q |
| |
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|||||||||||| ||||||||| ||| || | |||||| ||| |||||||| ||||||||||||||||||||||||||| |
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| T |
10150687 |
actgcttgaaaagggctgctggtaacattgctcgcttgaataacaaccaagctgctgctctccctggcaaatgtggtgttaacat |
10150603 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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